MXO03252.5prime Sequence
687 bp (631 high quality bases) assembled on 2007-08-28
> MXO03252.5prime
CAGTCGACATGATTGATACTAAGCCAACAAATCTTTTCTCATTTATTTTT
AACGCATACTCAGTACTCATCCAAGAGCCTGGCATGGAGGACGATCTCAG
TGACGATGGGCAGCCGCCGCCGTCCTTGCCGCCGCCCCAACTAGCGAAGG
CGGGCGGATCCGCTCCTGGATCTGGGAGCAAGGTCGAAAAGGGGGCGGCG
GCAGGTGGCGCCAACACGCTGAACTTAGGTATGGCACAAATAATTGTTAC
CGCTGCAACCCCCATGGTTGAAGACGGTGCCGATAAATCTTTCCCACCAG
TAGGCGAGAGCGATGCACAGCCAGTGGAGCCGGTGTCCAAGGAGCAGCCG
GCGGAAGTGGCCAAAAAGCCAGATATTGCGCCCAAGCCGCTGGCCAAGGT
GGCGCCACAGAGCGCGCCGGCCAAAGAAGGTAATGCTGGAGTGAGGCCCG
TGGTGAGCATTACACTGACCGAGTATCCATCCTGTGATGCAGAGGACCAA
CAGTCCTTCTCGGAGGGCACCGATTCGGCTTCGGTTGCCGATGTGCCGGT
ACTGCAGGATGCGGAGGATCCATTCAACGAGAAGGCCAAGGGAGAGTCCG
GCGACGGTTCGGGATTTGAGGCCAATTTTGAGGCCAACTTCGATGCCAAT
TTTGATGACGCCTTCGCTGGAATCGGAAGAAGTGGGG
MXO03252.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:19:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4641-PA | 885 | CG4641-RA | 1..669 | 9..677 | 3345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nwk-RF | 5420 | CG43479-RF | 3173..3851 | 9..687 | 3365 | 99.7 | Plus |
| nwk-RG | 4695 | CG43479-RG | 2500..3126 | 61..687 | 3105 | 99.7 | Plus |
| nwk-RK | 4713 | CG43479-RK | 2518..3144 | 61..687 | 3105 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9143525..9144124 | 88..687 | 2970 | 99.7 | Plus |
| 3L | 28110227 | 3L | 9143243..9143324 | 9..90 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:40:54 has no hits.
MXO03252.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:19:27 Download gff for
MXO03252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4641-PA | 1..679 | 9..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:08:42 Download gff for
MXO03252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4641-RA | 463..1141 | 9..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:55 Download gff for
MXO03252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nwk-RF | 3173..3851 | 9..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:42 Download gff for
MXO03252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nwk-RF | 3173..3851 | 9..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:42 Download gff for
MXO03252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9143243..9143323 | 9..89 | 100 | -> | Plus |
| 3L | 9143527..9144124 | 90..687 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:55 Download gff for
MXO03252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9136343..9136423 | 9..89 | 100 | -> | Plus |
| arm_3L | 9136627..9137224 | 90..687 | 99 | | Plus |
