MXO03254.5prime Sequence
629 bp (596 high quality bases) assembled on 2007-08-28
> MXO03254.5prime
CAGTCGACATGAGTGCCCTCATATTTCTGTGCGCGATTCTAATTGGTTTC
GTGATTTATTCACTCATCAGCTCGGCGCGGCGTCCCAAGAACTTTCCACC
AGGACCTCGATTTGTGCCATGGTTAGGAAACACATTACAGTTCCGTAAGG
AAGCTAGTGCTGTTGGCGGCCAGCACATCCTGTTCGAGCGCTGGGCAAAA
GACTTCCGGAGCGACCTGGTGGGTCTGAAGCTGGGCCGCGAATATGTGGT
GGTTGCCCTTGGCCACGAGATGGTGAAGGAAGTGCAGCTGCAGGAGGTGT
TCGAGGGGCGACCAGATAACTTCTTTCTGCGTCTGCGAACCATGGGAACC
CGCAAGGGCATCACCTGTACGGACGGACAGCTTTGGTACGAGCACCGACA
TTTTGCCATGAAGCAGATGCGCAACGTGGGCTACGGACGCAGCCAGATGG
AGCATCACATCGAACTGGAGGCGGAAGAGCTGCTGGGGCAGCTGGAGCGC
ACCGAGGAGCAGCCGATCGAGCCGGTCACTTGGCTGGCGCAGAGTGTACT
CAATGTACTGTGGTGTCTGATAGCTGGAAAGAGGATCGCCAGACAGGAGG
ATGGGACGTTGCGGCGTCTGCTCGACCTG
MXO03254.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8733-PA | 1515 | Cyp305a1-RA | 1..656 | 9..664 | 3230 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp305a1-RA | 1801 | CG8733-RA | 138..758 | 9..629 | 3105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19811446..19811937 | 629..138 | 2460 | 100 | Minus |
| 3L | 28110227 | 3L | 19813108..19813202 | 103..9 | 475 | 100 | Minus |
| 3L | 28110227 | 3L | 19812170..19812210 | 140..100 | 205 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G6 | 2042 | G6 G6_DM 2042bp | 1651..1700 | 259..210 | 106 | 68 | Minus |
MXO03254.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:19:34 Download gff for
MXO03254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8733-PA | 1..656 | 9..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:08:45 Download gff for
MXO03254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8733-RA | 115..742 | 1..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:12 Download gff for
MXO03254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 131..758 | 1..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:36 Download gff for
MXO03254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp305a1-RA | 131..758 | 1..629 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:36 Download gff for
MXO03254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19811446..19811934 | 141..629 | 100 | <- | Minus |
| 3L | 19812170..19812207 | 103..140 | 100 | <- | Minus |
| 3L | 19813109..19813208 | 1..102 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:12 Download gff for
MXO03254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19804546..19805034 | 141..629 | 100 | <- | Minus |
| arm_3L | 19805270..19805307 | 103..140 | 100 | <- | Minus |
| arm_3L | 19806209..19806308 | 1..102 | 96 | | Minus |
