MXO03255.5prime Sequence
660 bp (656 high quality bases) assembled on 2007-08-28
> MXO03255.5prime
CAGTCGACATGAGTGGCAAGCAGGTAGTCATCCTTCTGGGCAGTGTCCTG
ATCCTGGGATGCTTACAAGTGGCAGCGGCAACGGAAACGGATAACAAAAC
CAACGATTTCGTGGCCACCGACGAATGGCAGACGATTGCGGAAGGTCAAG
CTATTCCAAGGGGCCTGCACGTGCGCATCAACCTACAAACGGGGCTCAAG
GAAGCCAAACTCTTAGACGAAAGCGAACGTGGCACGTCGCTGCAGAGTCA
ACCGGATGATCAGAATGCTCGGGAATCTCACGATGACAACGAACCCCTGG
CTCTGGACTATAAACCGGACATAATCGAGGAGTCTATACGGCGGGTCAAG
GAGCAGAAGAAGAGCTATGCCGAGCTACGCAAAGCGTACAAAGAGTTCCA
GAAGAACTTTCGCACCGACGGAGAACTGATCGTCCAGTTAATCGATCAGT
TTCGGAACTTCAGCAGAACGCCGCTAGAGTCAGAGATGCGCTCCAAGCTG
GACTGCCTGGAAAATCTGGAGTATTTGCTCCATCAGATAGACAATGCCTT
GATGTTCATTGATAATGGGGGATTGGATGATGTACTACTGCCCATTGTTG
TGAACGATACCAGTACATCCCTGAGAGTGTCGGCCATGCGTGTGTTGGGC
TCGCTGGCGA
MXO03255.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10420-PA | 1290 | CG10420-RA | 1..652 | 9..660 | 3260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10420-RA | 1831 | CG10420-RA | 133..784 | 9..660 | 3260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25234683..25235200 | 660..143 | 2590 | 100 | Minus |
| 3R | 32079331 | 3R | 25235260..25235397 | 146..9 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:30:59 has no hits.
MXO03255.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:19:41 Download gff for
MXO03255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-PA | 1..651 | 9..659 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:08:48 Download gff for
MXO03255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-RA | 118..772 | 1..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:09 Download gff for
MXO03255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-RA | 129..783 | 1..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:21 Download gff for
MXO03255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10420-RA | 129..783 | 1..659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:21 Download gff for
MXO03255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25234684..25235198 | 145..659 | 100 | <- | Minus |
| 3R | 25235262..25235401 | 1..144 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:09 Download gff for
MXO03255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21060406..21060920 | 145..659 | 100 | <- | Minus |
| arm_3R | 21060984..21061123 | 1..144 | 97 | | Minus |
