MXO03264.5prime Sequence
639 bp (443 high quality bases) assembled on 2007-08-28
> MXO03264.5prime
CAATCGACATGGCCAAGGACAAGGAGGATGATCTGCTGCCCGACAAGGAT
GCGGCCAAGGGCTTCTATGCCAAATACGAGCCCAAGGAGATTCTGGGCAG
GGGCATCAGTTCGACCGTGAGGCGATGTATCGAAAAGGAGACGGGCAAGG
AGTTTGCCGCCAAGATCATCGACTTGGGCGCCACCACAGAGTCAGGCGAG
ACGAATCCATATCACATGCTGGAAGCAACCAAACAAAAAATCTCAATACT
GCGCCAGGTCATGGGGCATCCCTACATAATTGATCTGCAGGATGTGTTCG
AGTCATATGCATTTGTTTTCCTCGTCTTCGAGCTGTGTCCCAAAGGTGAA
CTCTTCGACTATCTGACCTCTGTGGTGACGCTATCCGAAAAGAAGACACG
CACCATTATGCGACAAATCTTTGAGGGCGTCGAGTACATACACGCGAAGA
GCATTGTCCATCGGGATCTTAAGCCCGAGAATATCTTGCTGGACGAGAAC
CACAACGTTAAGATCACGGATTTTGGCTTCGCCAAGCAGTTGCAAGAGGG
CGAGAAACTTACAAATCTGTGCGGAACGCCGGGTTATTTGGCTCCCGAAA
CGCTCAAGTGCAACATGTTCGAGGGATCCCCCGGCTACT
MXO03264.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1830-PB | 1260 | PhKgamma-RB | 1..632 | 9..640 | 3010 | 99 | Plus |
| CG1830-PC | 1509 | PhKgamma-RC | 1..632 | 9..640 | 3010 | 99 | Plus |
| CG1830-PA | 1509 | PhKgamma-RA | 1..632 | 9..640 | 3010 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PhKgamma-RH | 2522 | CG1830-RH | 512..1142 | 9..639 | 3065 | 99 | Plus |
| PhKgamma-RF | 2232 | CG1830-RF | 306..936 | 9..639 | 3065 | 99 | Plus |
| PhKgamma-RE | 3111 | CG1830-RE | 678..1308 | 9..639 | 3065 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11697311..11697595 | 280..564 | 1380 | 98.9 | Plus |
| X | 23542271 | X | 11697063..11697244 | 98..279 | 880 | 98.9 | Plus |
| X | 23542271 | X | 11696449..11696541 | 9..101 | 450 | 98.9 | Plus |
| X | 23542271 | X | 11697661..11697735 | 565..639 | 375 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Helena | 1317 | Helena HEL 1317bp | 923..968 | 355..310 | 113 | 71.7 | Minus |
MXO03264.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:20:15 Download gff for
MXO03264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1830-PA | 1..632 | 9..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:08:51 Download gff for
MXO03264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1830-RA | 286..923 | 1..639 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:15 Download gff for
MXO03264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PhKgamma-RE | 671..1308 | 1..639 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:37 Download gff for
MXO03264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PhKgamma-RE | 671..1308 | 1..639 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:37 Download gff for
MXO03264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11697311..11697595 | 280..564 | 98 | -> | Plus |
| X | 11697661..11697735 | 565..639 | 100 | | Plus |
| X | 11696442..11696540 | 1..100 | 96 | -> | Plus |
| X | 11697066..11697244 | 101..279 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:15 Download gff for
MXO03264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11590475..11590573 | 1..100 | 96 | -> | Plus |
| arm_X | 11591099..11591277 | 101..279 | 98 | -> | Plus |
| arm_X | 11591344..11591628 | 280..564 | 98 | -> | Plus |
| arm_X | 11591694..11591768 | 565..639 | 100 | | Plus |
