MXO03268.5prime Sequence
662 bp (599 high quality bases) assembled on 2007-08-28
> MXO03268.5prime
CAGTCGACATGGCTGCAATTGTGCGATTTAATTTGTTAACAAAGCCGCAG
ATTGTTGCGACTTTGCCGGCCAGCCTGCATGTGCAGCGCTTCCAGAGCAC
CCAGGCCCCACCTCCGGGCACTCCTCCGCCACAGACGAAGACCAAATTCG
GTCCGCTGGCGGACGAAGATCGCATCTTCACCAACCTCTATGGACGACAT
GACTGGAGGCTGAAGGGAGCTTTGAAGCGCGGCGACTGGTACAAAACCAA
GGAGATTGTGCTGAAGGGGGCTGACTGGATCGTTAACGAGATCAAGACGT
CCGGCCTGCGCGGACGTGGAGGAGCTGGCTTCCCCAGCGGTATGAAGTGG
TCCTTCATGAACAAGCCCGGAGATGGACGCCCCAAGTACTTGGTGGTGAA
TGCCGATGAGGGAGAGCCTGGCACCTGCAAGGATCGCGAGATCATGCGCC
ACGATCCACACAAGCTGGTGGAGGGCTGTCTGATTGCCGGACGCGCCATG
GGCGCCCAGGCTGCCTACATCTACATTCGTGGCGAGTTCTACAACGAGGC
TTCCAACATGCAACTGGCCATTGCCGAGGCATACCAGGCTGGTCTGATTG
GAAAGAATGCGTGCGGAACTGGCTACGACTTCGACGTCTTCATGGACCGC
GGCGCTGGACCT
MXO03268.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:20:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9140-PA | 1425 | CG9140-RA | 1..648 | 9..656 | 3065 | 98.9 | Plus |
| CG11423-PA | 2109 | CG11423-RA | 1007..1109 | 391..493 | 140 | 85.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9140-RB | 1553 | CG9140-RB | 34..684 | 9..659 | 3195 | 99.4 | Plus |
| CG9140-RA | 1590 | CG9140-RA | 71..721 | 9..659 | 3195 | 99.4 | Plus |
| CG11423-RA | 2143 | CG11423-RA | 741..1267 | 108..634 | 640 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6062074..6062436 | 416..54 | 1785 | 99.4 | Minus |
| 2L | 23513712 | 2L | 6061774..6062022 | 659..411 | 1200 | 98.8 | Minus |
| 2R | 25286936 | 2R | 17596007..17596533 | 108..634 | 640 | 74.8 | Plus |
| 2L | 23513712 | 2L | 6062642..6062687 | 54..9 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:40:57 has no hits.
MXO03268.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:20:34 Download gff for
MXO03268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9140-PA | 1..648 | 9..656 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:08:55 Download gff for
MXO03268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9140-RA | 71..724 | 9..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:56 Download gff for
MXO03268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9140-RA | 71..724 | 9..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:44 Download gff for
MXO03268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9140-RA | 71..724 | 9..662 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:44 Download gff for
MXO03268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6061771..6062021 | 412..662 | 98 | <- | Minus |
| 2L | 6062079..6062435 | 55..411 | 99 | <- | Minus |
| 2L | 6062642..6062687 | 9..54 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:56 Download gff for
MXO03268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6061771..6062021 | 412..662 | 98 | <- | Minus |
| arm_2L | 6062079..6062435 | 55..411 | 99 | <- | Minus |
| arm_2L | 6062642..6062687 | 9..54 | 100 | | Minus |
