MXO03269.5prime Sequence
665 bp (628 high quality bases) assembled on 2007-08-28
> MXO03269.5prime
CAGTCGACATGTGCCGGGCTCCCATTGCGTCACTCGACTGTATGGAGGAG
TTCAGTGGTACGGGCGGTCATCTTGATTTCGGTCGTTCGATCAGTTTGGG
CTCCAATCCGGCGCTACCATTGCGCCATGGATCCACACCAACGCCGGGAC
TGCGGTACAAGAATCTGGGCAAAAGCGGGTTGCGTATCTCGAATGTGGGA
TTGGGTACCTGGCCGGTATTTTCGCCGGGCGTGAGCGATGACCAGGCGGA
GGCAATCCTTAAGCTGGCCATCGAGAGCGGTATCAATCTGTTCGACATCT
CGGAGGCGCACTCGGAGACGGAGATCGGCAAGATACTGCAGCGGGCGGGC
TGGAAGAGGACCGCCTATGTCATCACCACGAAGGTCTACTGGAGCACCAA
GTCGGAGGAACGTGGTCTCTCCCGGAAACACATCATCGAATGTGTTCGTG
CCAGTTTGCAGCGATTGCAGCTGCAGTACATCGATATCGTCATCATCCAC
AAGGCGGATCCCATGTGTCCCATGGAGGTGGTGCGCGCCATGAGCTACGT
GATACAGCAGGGCTGGGCAATGTATTGGGGCACCGCTCGATGGAGCCAGG
TGGAGATCATGGAGGCCTATACCAACTGCCGCCAGTTCAACTGCATCACG
CCCATTGTGGAGCAG
MXO03269.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:20:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32688-PB | 1179 | Hk-RB | 1..649 | 9..657 | 3195 | 99.6 | Plus |
| CG32688-PA | 1644 | Hk-RA | 539..1114 | 82..657 | 2830 | 99.6 | Plus |
| CG32688-PA | 1644 | Hk-RA | 495..540 | 11..56 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hk-RG | 7021 | CG43388-RG | 1156..1813 | 8..665 | 3290 | 100 | Plus |
| Hk-RF | 3788 | CG43388-RF | 1411..2068 | 8..665 | 3290 | 100 | Plus |
| Hk-RD | 4046 | CG43388-RD | 1669..2326 | 8..665 | 3290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10241416..10241737 | 402..81 | 1610 | 100 | Minus |
| X | 23542271 | X | 10240882..10241019 | 665..528 | 690 | 100 | Minus |
| X | 23542271 | X | 10241114..10241241 | 528..401 | 640 | 100 | Minus |
| X | 23542271 | X | 10242808..10242884 | 83..7 | 370 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:09:15 has no hits.
MXO03269.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:20:40 Download gff for
MXO03269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32688-PB | 1..649 | 9..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:08:58 Download gff for
MXO03269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32688-RB | 292..957 | 1..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:06 Download gff for
MXO03269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hk-RF | 1403..2068 | 1..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:13 Download gff for
MXO03269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hk-RD | 1661..2326 | 1..665 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:13 Download gff for
MXO03269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10240882..10241018 | 529..665 | 100 | <- | Minus |
| X | 10241114..10241241 | 401..528 | 100 | <- | Minus |
| X | 10241418..10241736 | 82..400 | 100 | <- | Minus |
| X | 10242810..10242888 | 1..81 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:06 Download gff for
MXO03269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10134915..10135051 | 529..665 | 100 | <- | Minus |
| arm_X | 10135147..10135274 | 401..528 | 100 | <- | Minus |
| arm_X | 10135451..10135769 | 82..400 | 100 | <- | Minus |
| arm_X | 10136843..10136921 | 1..81 | 93 | | Minus |
