MXO03274.5prime Sequence
864 bp (853 high quality bases) assembled on 2007-08-28
> MXO03274.5prime
CAGTCGACATGGGGGACCAACAGCAGCTGATCCTGGCCACCGGTGGTTAT
GACCACACCATTAAGGTGTGGCAGGCGCACACGGGCAACTGCATTAAGAC
GATGAGATTCGTGGAGACCTCGCAAGTGAATGCGCTAGACAGGACACCGG
ATAAGACGCGACTGGCGGCGTGCGGATACCAGTGCATCCGGCTGTACGAC
CTGGAGTCCAACTGCACCGCACCGGTGATCAATTTCGATGGCGTGCAAAA
GAATGTGACGCGACTTGGCTTCCAAGAGGACGGCAATTGGATGTTCACCG
CCGGCGAGGATCATCACGTGCGGATCTGGGACATGATTGCCGCACCGCCA
CACTGTTCCCGGATCTTTGATTGTGAGGCGCCGGTAAATGCCGCCTGTTT
GCATCCCAACCAGGTGGAGATCGCCATGGGCTCACAAAATGGCAGCGTCT
TTCTGTGGGACGTCAAGTCGGAGCGGCACGAACGCATCGTGCCCGAGGTG
GACGCATCCATTCAGGATGTTGCCATCTCGCCGGATGGCAGATACTTGGC
GGCGGCCAATAACAAGGGCAACTGCTACATCTGGTCGCTGACCAGTCAGG
ATCAGAAGATGAGCACGCTGCGGCCGAACAGGAAAATTCCGGCCCACTCT
CGCTACATACTGCGCTGCAAATTCAGTCCCGATTCCAGGCTACTGCTGAC
GACATCCGGCGATGGCACTGTGTGCATTTGGAAGACGGATGACTTTAGCA
AATGGCGCGAGCTGTGCATCGAGAACTATTGGGTGTGGGATGCCGCCTTT
AGCGCCGATTCTAAATGGCTGTTCACAGCCTCATCCGACGGCATTGCACG
ACTGTGGGAGCTGC
MXO03274.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lst8-RA | 1760 | CG3004-RA | 95..950 | 9..864 | 4265 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9604964..9605706 | 864..122 | 3700 | 99.9 | Minus |
| X | 23542271 | X | 9605762..9605875 | 122..9 | 570 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:08:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5A | 2841 | G5A G5A 2841bp | 2026..2075 | 24..73 | 124 | 72 | Plus |
MXO03274.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:14 Download gff for
MXO03274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lst8-RA | 91..950 | 1..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:16 Download gff for
MXO03274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lst8-RA | 91..950 | 1..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:16 Download gff for
MXO03274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9604964..9605705 | 123..864 | 99 | <- | Minus |
| X | 9605762..9605879 | 1..122 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:14 Download gff for
MXO03274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9498997..9499738 | 123..864 | 99 | <- | Minus |
| arm_X | 9499795..9499912 | 1..122 | 96 | | Minus |
