MXO03275.5prime Sequence
865 bp (749 high quality bases) assembled on 2007-08-28
> MXO03275.5prime
CAGTCGACATGATAAAAATTAAGCGAAAAACAGCCCCTCCGCCCGTGGAA
CAGGACTCGGACAGCGATTCCAGCTTTGACGAGGAGGAGCCACAGGATTT
GGAAGTCCAGGAGGGGCCAGTCACTGATAGCAGCGATGAAGAAGCCGCCT
CCAGCAGCAAAAAAACGGCCAAACAAGGGGAAGCCAGTGAGGATTTAAAG
GAAGAGGATGATGACGACGATGAGGAGGAGAATGACGACGACGACGAAGA
AGAGGATGATGACGACGACGACGACAAGAAGACACGAATTCCTGTTTTGA
ATCCCCTCAGCTGGATGCGCAACAAGGAGCAGCGTTTGGCGTTGTACAAA
AAAATGAAGAAGGAGAAGCACAAGAAAAAAATGCAGGAGCGCCGTGCCCG
ACGGAAGGCTGGTGTACCCGCCAATCCTGGTCACACCATAGAGAGCCTGC
GAGAGAAGGACCAAACAGAGGTGGCCAATCTGAACGATTCCGACAACGAG
GAGTTGCAAAAGGAACTCCAACTGGACGATTTCAGCTCGTACTTCGAACG
TTCGTACGAGCCAAAGGTGCTGATCACTTTTGCTGACAATCCGGTGACCA
AGACGCGTAAGTTTGGACTGGAGCTTTCGCGCATATTCCCCAACGCCCTG
GTTAAGATTCGCAACAAGTCGTCGGTGAAGAAGATATGCAAAAGCGCCGA
GCGCGAGGAGTTCACAGACGTCGTGATCGTTAACGAAGATCGCAGAAAGC
CCAATGGGCTGCTGGTCATTCATCTGCCCAATGGTCCCACTGCCCACTTC
AAGCTGTCCAACGTGAAGCTCACCTCGGACATAAAGCGCGATCACAAGGA
GATAAACCAGCACAG
MXO03275.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-06-29 15:21:08 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6712-RA | 1336 | CG6712-RA | 92..948 | 9..865 | 4255 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12095564..12096420 | 865..9 | 4255 | 99.8 | Minus |
Blast to na_te.dros performed 2014-11-28 19:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tom1 | 410 | Tom1 DMTOM1_LTR 410bp | 54..132 | 371..294 | 109 | 60.8 | Minus |
MXO03275.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:41 Download gff for
MXO03275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 92..948 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:20 Download gff for
MXO03275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6712-RA | 92..948 | 9..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:20 Download gff for
MXO03275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12095564..12096420 | 9..865 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:41 Download gff for
MXO03275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12095564..12096420 | 9..865 | 99 | | Minus |
