MXO03284.5prime Sequence
860 bp (653 high quality bases) assembled on 2007-08-28
> MXO03284.5prime
CAGTCGACATGACGGTGACGAATCGGATGGAAATCGAGTCGGCCTACCAT
AAAGGCGAGGGATTCCGGTCCTACTACATCCAAAAGATCGAGGAACTGCA
GCTGGTGGTGGCCGAGAAGCACCAGAATTTGAGACGACTGCAGGCCCAGC
GCAATGAGCTCAATGCTAAAGTTCGGATGCTGCGGGAGGAGCTGCAGCTG
CTCCAGGAACAGGGTAGCTATGTGGGCGAGGTTGTGAAGCCCATGGACAA
GAAGAAAGTGCTGGTCAAGGTGCATCCCGAGGGCAAGTTCGTCGTCGATC
TGGACAAAAACATAGATATCAACGACGTAACCCCCAATTGCCGCGTGGCC
CTGCGCAATGAGAGCTATACGCTGCACAAGATTCTGCCCAATAAGGTGGA
TCCGCTGGTCTCGCTTATGATGGTTGAAAAAGTTCCTGACTCCACATACG
AAATGGTTGGCGGCCTGGACAAACAGATTAAAGAGATCAAGGAGGTGATT
GAGTTGCCCGTAAAGCATCCAGAGCTGTTTGATGCCTTGGGTATTGCCCA
GCCGAAGGGAGTGCTCCTTTATGGACCTCCAGGTACAGGAAAGACTTTGC
TGGCCAGGGCCGTTGCCCATCACACCGAGTGCACCTTCATTCGCGTCTCT
GGCTCAGAGCTGGTCCAGAAATTCATCGGCGAGGGTTCGCGCATGGTTCG
AGAACTCTTTGTAATGGCCCGGGAACATGCACCATCAATTATTTTCATGG
ACGAAATCGATTCCATTGGCTCGTCGCGTATTGAGTCAGGTTCCGGCGGC
GATTCCGAGGTGCAGCGTACTATGCTGGAGCTACTTTACCAGCTGGACCG
CTTTGAGGCC
MXO03284.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1489-PA | 1218 | Pros45-RA | 1..864 | 9..872 | 4295 | 99.8 | Plus |
| CG2241-PA | 1200 | CG2241-RA | 322..377 | 345..400 | 155 | 91 | Plus |
| CG2241-PA | 1200 | CG2241-RA | 460..497 | 483..520 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt6-RA | 1404 | CG1489-RA | 127..978 | 9..860 | 4230 | 99.8 | Plus |
| Rpt6R-RA | 1445 | CG2241-RA | 290..1007 | 139..859 | 1355 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21316547..21317237 | 170..860 | 3425 | 99.7 | Plus |
| 3R | 32079331 | 3R | 30582636..30583322 | 859..170 | 1300 | 79.6 | Minus |
| X | 23542271 | X | 21316258..21316403 | 26..171 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:23:51 has no hits.
MXO03284.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:22:04 Download gff for
MXO03284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1489-PA | 1..864 | 9..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:09:08 Download gff for
MXO03284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1489-RA | 119..970 | 9..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:04 Download gff for
MXO03284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt6-RA | 127..978 | 9..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:24 Download gff for
MXO03284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt6-RA | 127..978 | 9..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:24 Download gff for
MXO03284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21316178..21316195 | 9..26 | 100 | -> | Plus |
| X | 21316259..21316403 | 27..171 | 100 | -> | Plus |
| X | 21316549..21317237 | 172..860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:04 Download gff for
MXO03284.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21187205..21187222 | 9..26 | 100 | -> | Plus |
| arm_X | 21187286..21187430 | 27..171 | 100 | -> | Plus |
| arm_X | 21187576..21188264 | 172..860 | 99 | | Plus |
