MXO03286.5prime Sequence
838 bp (665 high quality bases) assembled on 2007-08-28
> MXO03286.5prime
CAGTCGACATGACAAAAAGTATTAAACGTCCGCCCCCCTTTAGTTGTAAA
CAAGTTCTTCTTACCTATGTGATATTAGCTTATACAGTAGCCGCCCACAG
CTCGCCCCCGCCATGTGGCCTTTATGGAGCCCCGCCTTGCCAGTTCCTCC
CGGCGCCACCTGGACAAACGCCCACCTGTGCCCGTCCAGGAAAGACGTAC
TGCGAGCACGCCGATAACTACCCCACGTATCTCATAAAGAGCCTCGTTCG
AAAGTGGGGCTATGAGGCCGCCACTCTGTTGGTGGACGAAACCTGGGAAG
ATTTTGCGGCTGTGGCGTGGCACGATACTCCCGTCTTCTACGATCCCAAG
TCCATCTTCCCGCCCCGGGATCCCGCTGCCCAGGACTTTAATGGATATAG
TTATCAGACACCCTTCGGAGGTAATCCCCAGAGACCGTCTGGGGGTGGAA
ACCCGCTCTTTGTCAGCAATCCCTCTACGGAAGCACCCACGTATCTTCTG
TACACCTCCTCCGGTGGAGGTCATCGCTCGGGTCACCGGTATAACTCCCA
GGGCGGAGGCACCTCATCTTCTGGCGGTCACTTGTACATCAATCAGAGTG
ACAAGTCGACTCCCTACAATGCCACGCTCTGGCTGAAGCGCTTGGTCAGG
GATCTCAGTCGGAAGCAGAGGCAACCCGACGAGGTTCAAGCGGAGGTGGT
GGAGCCGGTGAACGAGCAGACAGAGGAGGCCGAGGAACAGGACAACCCGG
CAGAGGATCACCCACAAAGCAAGCGCGATGTCTCGCTCAACATGGATCTC
TTGGATATCGTGGGCGTGGAAGCCCCCCATCCGCTGAA
MXO03286.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:22:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9972-PA | 1164 | CG9972-RA | 1..830 | 9..838 | 4125 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spz5-RA | 1996 | CG9972-RA | 383..1212 | 9..838 | 4135 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2886061..2886408 | 838..491 | 1725 | 99.7 | Minus |
| 3L | 28110227 | 3L | 2886686..2886952 | 493..227 | 1335 | 100 | Minus |
| 3L | 28110227 | 3L | 2888888..2889045 | 228..71 | 790 | 100 | Minus |
| 3L | 28110227 | 3L | 2889101..2889163 | 71..9 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:56:12 has no hits.
MXO03286.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:22:18 Download gff for
MXO03286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9972-PA | 1..828 | 9..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:09:11 Download gff for
MXO03286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9972-RA | 372..1208 | 1..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:15 Download gff for
MXO03286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz5-RA | 374..1212 | 1..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:14 Download gff for
MXO03286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz5-RA | 374..1212 | 1..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:14 Download gff for
MXO03286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2886061..2886408 | 491..838 | 99 | <- | Minus |
| 3L | 2886689..2886952 | 227..490 | 100 | <- | Minus |
| 3L | 2888890..2889044 | 72..226 | 100 | <- | Minus |
| 3L | 2889101..2889170 | 1..71 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:15 Download gff for
MXO03286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2886061..2886408 | 491..838 | 99 | <- | Minus |
| arm_3L | 2886689..2886952 | 227..490 | 100 | <- | Minus |
| arm_3L | 2888890..2889044 | 72..226 | 100 | <- | Minus |
| arm_3L | 2889101..2889170 | 1..71 | 94 | | Minus |
