MXO03292.5prime Sequence
832 bp (795 high quality bases) assembled on 2007-08-28
> MXO03292.5prime
CAGTCGACATGAGCTATTGGCGTGTGACGTCATCGTTTTTGCTAGCCAGG
GCACGGCCACGCCTCCCACAAACATTACGCCCACTGAGCACCATGAACGA
ATGCCGGAAGAACATCACAAACATCACAAACATTACAGCGAACAACAGCA
TTCTATGCGCAAAGAGCATTAGCAAAAAGCATTTGTTTCTAGAGAAACGG
AGCATGTCGGATCGTTCGGAGAACTCCAAGGATGTGGCAAAGGGACAGGA
TATATCAAATCCAATGGAACTAACAGCCGAGGATCGACTGGCCATTGAGG
AGCGGCAAAATAAAGCGTTCGCCTTCTTCGCCGAAACCCTGCAAATCTAC
GGCGTCGAGGAGCTAATTTTCTGTTTCAACGGCGGCAAGGATTGCACCGT
GCTGCTCGATCTCCTTATGCGTTACCTGCGCCAGGAGAACATCTCCAGCG
GCGACATTCCCATGCTGTACATTAAATCCGGCGATTCGTTTCCGGAAATC
GATGAGTTCGTCGAGCGTTGCGTACGCAACTACCGCGTCCAGTTGGTTCA
GTACGAGGGTACGCTCAAGGAGGCACTCACCCACATGTCGTCGGACATGC
CGCGGATCAAGGCCGTCTTCGTGGGCAGCCGCAACACGGATCCCTACTGC
CAGCATCTGGCGCCCATGCAGCCCACGGACAACGACTGGCCGCCGATGAT
GCGCCTGAATCCGCTGCTGGAGTGGAGCTACCACGACGTCTGGCACTACA
TCCACTTGAACTCGGTGCCCTATTGCAGCCTGTACGATCGGGGCTACACC
TCGATCGGGAATCGTGCGAACACAGTGCCTAA
MXO03292.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:22:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4407-PA | 969 | CG4407-RA | 1..681 | 9..689 | 3405 | 100 | Plus |
| CG4407-PB | 885 | CG4407-RB | 1..597 | 93..689 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4407-RA | 1338 | CG4407-RA | 175..1000 | 7..832 | 4130 | 100 | Plus |
| CG4407-RB | 1235 | CG4407-RB | 86..897 | 21..832 | 4060 | 100 | Plus |
| CG16848-RA | 1198 | CG16848-RA | 550..670 | 679..799 | 185 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12902316..12902967 | 671..20 | 3260 | 100 | Minus |
| X | 23542271 | X | 12901691..12901853 | 832..670 | 815 | 100 | Minus |
| 2L | 23513712 | 2L | 13413068..13413188 | 679..799 | 185 | 76.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:01:35 has no hits.
MXO03292.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:22:35 Download gff for
MXO03292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4407-PA | 1..681 | 9..689 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:09:14 Download gff for
MXO03292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4407-RA | 136..965 | 1..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:57 Download gff for
MXO03292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4407-RA | 169..1000 | 1..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:36 Download gff for
MXO03292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4407-RA | 169..1000 | 1..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:36 Download gff for
MXO03292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12901691..12901851 | 672..832 | 100 | <- | Minus |
| X | 12902316..12902966 | 21..671 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:57 Download gff for
MXO03292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12795724..12795884 | 672..832 | 100 | <- | Minus |
| arm_X | 12796349..12796999 | 21..671 | 100 | <- | Minus |
