MXO03295.5prime Sequence
790 bp (630 high quality bases) assembled on 2007-08-28
> MXO03295.5prime
CAGTCGACATGGGAAAATTCGAATACTCACTGGGTCTCAATGAGCTCAAA
TCCAAGGAGCTGCGATTGTGGCAGGCCTTGATTGGAGAATTCCTTGGCAA
TTTGATCCTCAATTTCTTTGCCTGCGGCGCATGCACCCAAATTGAGGATG
GCACCTTCAAGGCCTTGGCTTTTGGCCTGGCTATCTTCATGGCCATCACG
ATTGTGGGCCACTTGAGTGGTGGTCATGTGAATCCTGCCGTTACCGCTGG
AATGTTGGTCGCAGGACGAATTAGCTTGATCAGAGCCTTTTTCTATGTGG
TTTTCCAGTGCTTGGGTGCAATTGCCGGAACTGCAGCGGTTAAGATTCTC
ATCGATCAGGACTATTACAATGGCCTGGGTCACACCTCTCTGGCGCCCAA
TATCACCGAGCTGCAGGGCCTGGGAATCGAGTTCTTCCTGGGACTCCTGC
TGGTGCTCGTCGTCTTTGGGGCCTGTGATCCCCACAAGCCCGATTCCCGC
TACACGGCGCCCTTGGCCATCGGAATGGCGGTGACCCTGGGTCACTTGGG
CACCATCCGCTACACCGGGGCCAGCATGAATCCCGCTCGCACCGTGGGCA
CCGCCTTTGCCACCGACATCTGGGCGTCGCATTGGGTATACTGGGTGGGA
CCTGTGCTGGGGGGCGTGGCTGCCGCCCTGCTCTACACCCAGGTCCTGGA
GGCGAAGCCCGTGCCAAAGGTTAACGAGGCATCCGAGAAGTACCGAACGC
ACGCCGATGAACGCGAGGTGAGAGTCAGGTTGATAAGCGC
MXO03295.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7777-PB | 807 | CG7777-RB | 1..804 | 9..812 | 3945 | 99.6 | Plus |
| CG7777-PA | 795 | CG7777-RA | 1..759 | 9..767 | 3745 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7777-RB | 1386 | CG7777-RB | 216..997 | 9..790 | 3910 | 100 | Plus |
| CG7777-RC | 1479 | CG7777-RC | 216..975 | 9..768 | 3800 | 100 | Plus |
| CG7777-RD | 1388 | CG7777-RD | 216..974 | 9..767 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11441066..11441513 | 343..790 | 2240 | 100 | Plus |
| 2R | 25286936 | 2R | 11439968..11440125 | 43..200 | 790 | 100 | Plus |
| 2R | 25286936 | 2R | 11440186..11440330 | 200..344 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:56:19 has no hits.
MXO03295.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:22:48 Download gff for
MXO03295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7777-PB | 1..807 | 9..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.3.fasta performed 2008-04-10 09:09:17 Download gff for
MXO03295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7777-RB | 208..994 | 2..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:18 Download gff for
MXO03295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7777-RB | 211..997 | 2..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:16 Download gff for
MXO03295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7777-RB | 211..997 | 2..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:16 Download gff for
MXO03295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11439970..11440125 | 45..200 | 100 | -> | Plus |
| 2R | 11440187..11440330 | 201..344 | 100 | -> | Plus |
| 2R | 11441068..11441513 | 345..790 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:18 Download gff for
MXO03295.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7327475..7327630 | 45..200 | 100 | -> | Plus |
| arm_2R | 7327692..7327835 | 201..344 | 100 | -> | Plus |
| arm_2R | 7328573..7329018 | 345..790 | 100 | | Plus |
