MXO03305.5prime Sequence
711 bp (611 high quality bases) assembled on 2007-06-15
> MXO03305.5prime
CAGTCGACATGAAGGTGAAAATGATTAGTCGCAATCCGGATAACTATGTC
CGAGAAACCAAACTGCAACAGCACAAAATGCCCAGGAACTACGATCCTTC
GCTGCATCCTTTGGAGGGTCCCAGGGAATACGTGCGTGCCCTGAATGCCA
CCAAGTTGGATCGAGTATTTGCCAAACCCTTCGTCTGCAATTTGAGCGGG
CATCGCGATGGAGTCTCCTGCTTCGGAAAGCATCCCAAGCAACTTTCCAC
CTTGGCCACCGGCGCCTATGACGGCGAAGTGCGCATTTGGGACTTGGCGA
ATCGTATCAGCTCTCGGAACTTTGTGGCCCACGACGGTTTCGTTCGCGGC
ATTGCTTACACCCAGAACGGAGGTCGCATTTTCACCGTGGGAGATGATAA
AACCATCAAGGTTTGGAAAGCAGAGGCTCCGGAAGTCGGCGAGGATGAGG
TGCCGGTGAACACTATACTGAGTAAATTTGGACTGCACGGCATCTCGCAC
AATCGCAGGGATAACAAGTTCGCCACCTGTGGCGAGGTATGCGCCATTTG
GGACGAAAGGCACAACGATCCTTTGAAGACATTGAAGTGGGGCGTCGATA
CCCTTCACACCATATCCTATAACCCCCGTGGAAACAAGCATCCTGCCGTG
CTGTGCCAGCGATCGCAGCATTATCCTGTACGATCAGAGAGAGGCGCAGC
CACTAAGGAAG
MXO03305.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:23:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7275-PA | 1341 | CG7275-RA | 1..618 | 9..626 | 3090 | 100 | Plus |
| CG7275-PA | 1341 | CG7275-RA | 615..702 | 624..711 | 415 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7275-RA | 1495 | CG7275-RA | 102..803 | 9..711 | 3475 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15499182..15499813 | 79..711 | 3100 | 99.7 | Plus |
| 3L | 28110227 | 3L | 15499060..15499129 | 9..78 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:59:01 has no hits.
MXO03305.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:23:17 Download gff for
MXO03305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7275-PA | 1..702 | 9..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:55 Download gff for
MXO03305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7275-RA | 94..803 | 1..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:29 Download gff for
MXO03305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7275-RA | 94..803 | 1..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:29 Download gff for
MXO03305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15499052..15499129 | 1..78 | 94 | -> | Plus |
| 3L | 15499182..15499813 | 79..711 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:55 Download gff for
MXO03305.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15492152..15492229 | 1..78 | 94 | -> | Plus |
| arm_3L | 15492282..15492913 | 79..711 | 99 | | Plus |
