MXO03306.5prime Sequence
654 bp (576 high quality bases) assembled on 2007-06-15
> MXO03306.5prime
CAATCGACATGGCCATGTCCCGAATCCCAATTCTGAAGCCCATGCAGCAT
CCATTGCTCATCCTGCCAGTGCTCCTTCTCGTCCTGATCGTCAGCGAGGC
AGCGGCGGGCTCCTTGGTGTCCCCGAACAACAGGCAACCATCGCAGAGGT
TCTTCTACGCCGCCGCCACGTCCTCCTCCTCCACGCAGACCAAGGTGCGC
CTGCTCCGCCAGGCGGACAATCCCAGTGCGGCGCCAGGTGCACTGGAGGG
CAGCTGCTGCCAAGGAGCAGCTGCGGAAGCCGGAACACCATTGACGCTCC
CACTGTCCGTGTCCGCTGAGCTGACCAACGTGACCGCCGACTACGATGTG
TCCGGCGAGATGCCCTCCTCCAAGGAAAACTTTAAGCGCAGCATCATGAA
ACCAACCGTGAGGAATGCAACGCCGGCGAGCTGCTCCCCGCAACCGACGA
TCGTGGAGCTGAAGCCACCGGCGGAGGACGAGGCGAACTACTACTATATG
CCCGCGTGCACGCGGATCAGCCGATGCAATGAATGCTGCGGATCCACGCT
GATCTCCTGCCAGCCAACGGAGGTAGAGCACGTGCAGCTGCGGGTGCGCA
AGGTGGACCGGGCGGCCACCAACGGACGCAAACCGTTCACCATCATCACC
GTGG
MXO03306.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-27 15:28:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7103-PA | 978 | Pvf1-RA | 1..646 | 9..654 | 3030 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvf1-RC | 2783 | CG7103-RC | 327..973 | 8..654 | 3115 | 98.8 | Plus |
| Pvf1-RA | 1896 | CG7103-RA | 327..973 | 8..654 | 3115 | 98.8 | Plus |
| Pvf1-RB | 1804 | CG7103-RB | 266..881 | 39..654 | 2975 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18838054..18838342 | 8..296 | 1400 | 99 | Plus |
| X | 23542271 | X | 18840630..18840881 | 403..654 | 1200 | 98.4 | Plus |
| X | 23542271 | X | 18840381..18840460 | 296..375 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:00:32 has no hits.
MXO03306.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-27 15:28:24 Download gff for
MXO03306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7103-PA | 1..646 | 9..654 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:04 Download gff for
MXO03306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvf1-RA | 321..973 | 1..654 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:33 Download gff for
MXO03306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvf1-RA | 321..973 | 1..654 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:33 Download gff for
MXO03306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18838048..18838342 | 1..296 | 97 | -> | Plus |
| X | 18840382..18840460 | 297..375 | 100 | -> | Plus |
| X | 18840532..18840558 | 376..402 | 96 | -> | Plus |
| X | 18840630..18840881 | 403..654 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:04 Download gff for
MXO03306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18732081..18732375 | 1..296 | 97 | -> | Plus |
| arm_X | 18734415..18734493 | 297..375 | 100 | -> | Plus |
| arm_X | 18734565..18734591 | 376..402 | 96 | -> | Plus |
| arm_X | 18734663..18734914 | 403..654 | 98 | | Plus |
