MXO03307.5prime Sequence
615 bp (602 high quality bases) assembled on 2007-06-15
> MXO03307.5prime
CAGTCGACATGGCCAGCACAGACATTCCCATGGAGGCAGCTGTGGAATCG
GCGACCGGCATCACGCCCAATTCAAATGCGAACTCAGACAATGTGGCGAA
GAAGCTGCCCGCGGAGGGCTCCACCGGTGATAATCCCAATGCCAACGCCG
ACGAGATGACGTCCCGCGACTATTACTTTGACTCCTATGCCCATTTCGGG
ATCCACGAGGAGATGCTCAAGGACGAAGTGCGCACCGTCACATACCGCAA
CGCCATGTACCACAACAAGCATCTGTTTCAGGGCAAGACCGTACTGGACG
TGGGTTGCGGTACCGGCATTCTCTCCATGTTCGCTGCCAAAGCCGGTGCT
GCTCAGGTGATTGCCGTCGACTGCTCCAACATCATTGAGTTTGCCCGCCA
AGTGGTCATTGACAACAATCTGCAGGATGTAATCACGGTTGTCAAGGGCA
AGATTGAGGAGATTGAGCTTCCAAATGGTATTGAGGGAGTGGACATTATT
ATTTCCGAGTGGATGGGTTACTGCCTGTTCTACGAATCCATGCTGGATAC
AGTGTTGTACGCTCGGGACAAGTGGCTGAAGAAGGACGGCATGATGTTCC
CAGATAGGGGCACGC
MXO03307.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6554-PA | 1131 | Art1-RA | 1..607 | 9..615 | 3010 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art1-RA | 1528 | CG6554-RA | 113..719 | 9..615 | 3020 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10787773..10788049 | 287..11 | 1370 | 99.6 | Minus |
| 3R | 32079331 | 3R | 10787475..10787706 | 517..286 | 1160 | 100 | Minus |
| 3R | 32079331 | 3R | 10787290..10787388 | 615..517 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:01:45 has no hits.
MXO03307.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:23:32 Download gff for
MXO03307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6554-PA | 1..607 | 9..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:04 Download gff for
MXO03307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art1-RA | 113..719 | 9..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:44 Download gff for
MXO03307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art1-RA | 113..719 | 9..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:44 Download gff for
MXO03307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10787290..10787387 | 518..615 | 100 | <- | Minus |
| 3R | 10787475..10787704 | 288..517 | 100 | <- | Minus |
| 3R | 10787773..10788056 | 1..287 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:04 Download gff for
MXO03307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6613012..6613109 | 518..615 | 100 | <- | Minus |
| arm_3R | 6613197..6613426 | 288..517 | 100 | <- | Minus |
| arm_3R | 6613495..6613778 | 1..287 | 98 | | Minus |
