MXO03309.5prime Sequence
604 bp (586 high quality bases) assembled on 2007-06-15
> MXO03309.5prime
CAGTCGACATGTCGTTTGCGGAAAAGATAACGGGTCTGCTGGCACGGCCG
AATCAACAAGATCCAATTGGACCGGAGCAGCCGTGGTATCTCAAATATGG
AAGTCGATTGCTGGGCATTGTGGCCGCCTTCTTTGCCATTCTTTTCGGCC
TGTGGAATGTGTTCTCCATCATCACGCTCAGCGTATCCTGCCTGGTGGCT
GGCATCCTTCAAATGGTGGCAGGATTTGTGGTGATGCTCTTGGAGGCTCC
CTGCTGTTTCGTCTGCTTTGGGCAGGTGAACGAGATCGCGGAAAAGGTGG
AATCTAAGCCCTTGTACTTCCGTGCCGGGCTCTACATTGCCATGGCCATT
CCGCCCATTATTCTGTGCTTTGGACTGGCCAGCTTATTCGGCAGTGGGCT
GATCTTTGGCACTGGCGTGGTTTACGGCATGATGGCGTTAGGCAAGAAAG
CATCCGCCGAGGACATGCGGGCAGCTGCTCAGCAAACCTTCGGAGGAAAC
ACACCTGCCCAAACCAACGATCGAGCGGGGATTGTGAACAACGCCCAGCC
CTTCTCCTTCACCGGTGCCGTGGGCACGGACAGCAATGTGGCAAGCTTTC
TAAA
MXO03309.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:23:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6151-PA | 585 | CG6151-RA | 1..582 | 9..590 | 2910 | 100 | Plus |
| CG6151-PB | 579 | CG6151-RB | 1..443 | 9..451 | 2215 | 100 | Plus |
| CG6151-PC | 474 | CG6151-RC | 1..440 | 9..448 | 2200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fwe-RA | 1342 | CG6151-RA | 134..716 | 8..590 | 2915 | 100 | Plus |
| fwe-RB | 3020 | CG6151-RB | 134..593 | 8..467 | 2225 | 99.1 | Plus |
| fwe-RC | 2364 | CG6151-RC | 134..574 | 8..448 | 2205 | 100 | Plus |
| fwe-RB | 3020 | CG6151-RB | 2253..2394 | 449..590 | 710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15813419..15813626 | 340..133 | 1040 | 100 | Minus |
| 3L | 28110227 | 3L | 15810707..15810848 | 590..449 | 710 | 100 | Minus |
| 3L | 28110227 | 3L | 15815936..15816057 | 132..11 | 610 | 100 | Minus |
| 3L | 28110227 | 3L | 15813246..15813353 | 448..341 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:15 has no hits.
MXO03309.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:23:41 Download gff for
MXO03309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6151-PA | 1..585 | 9..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:19:28 Download gff for
MXO03309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwe-RA | 127..716 | 1..590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:34 Download gff for
MXO03309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fwe-RA | 127..716 | 1..590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:34 Download gff for
MXO03309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15810707..15810848 | 449..590 | 100 | <- | Minus |
| 3L | 15813246..15813353 | 341..448 | 100 | <- | Minus |
| 3L | 15813419..15813626 | 133..340 | 100 | <- | Minus |
| 3L | 15815936..15816059 | 8..132 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:19:28 Download gff for
MXO03309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15809036..15809159 | 8..132 | 99 | | Minus |
| arm_3L | 15803807..15803948 | 449..590 | 100 | <- | Minus |
| arm_3L | 15806346..15806453 | 341..448 | 100 | <- | Minus |
| arm_3L | 15806519..15806726 | 133..340 | 100 | <- | Minus |
