MXO03311.5prime Sequence
621 bp (618 high quality bases) assembled on 2007-06-15
> MXO03311.5prime
CAGTCGACATGTCGGACTTTGAAATGGAGGACAGTGCCTCGGGCTACGAC
TCAGGGGATAACTCAGATGCCGAGCTGCAAGCGGCATTTGAGCGAGGCGA
CTTGAAACCAGGCCTAAATGTGGAATTCAATGGCCAGAGAGACAAAGTGA
ACGATGTGACCAAACTGCTGGCCAAGACAGAGGCTATCAAGATGCAACTG
CCTTGGCTGGAACGCCTGGACATGATCAACACACTAGCTCCACTGGCGCC
GGAACTCGCTGTACAGCTGGAGAAGCACGAGCAGAAGCGGGCCAATCTCT
TCAAGGGCAACGCCAAGCTGCCCTACATTCGGCCCGAGGAGGATCCCGTC
CTGAATGACTTCAAGAGGGAGATGCTCTTCCACCGACAGGCGCTAAGTGC
TGTTCTGGAGGCCATTCCCCGCCTTCACGAGCTGGGCATAAAGACTCGTC
GACCCGATGACTACTTCGCTGAAATGGCCAAGTCCGACGAGCACATGCAG
AAGGTGCGCGCCAACCTGATGGCCAAACAGCAAGGACAGGCGAAATCCGA
GCGCATCAAGCAGATCCGCGAGCAGCGCAAGATGGGCAAGATGCTGGCCA
AACAGACCAAGGTCCCACGCG
MXO03311.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:23:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1542-PA | 924 | CG1542-RA | 1..613 | 9..621 | 3015 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1542-RA | 1207 | CG1542-RA | 84..699 | 6..621 | 3050 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31213813..31214276 | 158..621 | 2290 | 99.6 | Plus |
| 3R | 32079331 | 3R | 31213670..31213755 | 73..158 | 430 | 100 | Plus |
| 3R | 32079331 | 3R | 31213541..31213609 | 6..74 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:56:23 has no hits.
MXO03311.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:23:53 Download gff for
MXO03311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1542-PA | 1..613 | 9..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:19:35 Download gff for
MXO03311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1542-RA | 78..699 | 1..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:39 Download gff for
MXO03311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1542-RA | 78..699 | 1..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:39 Download gff for
MXO03311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31213535..31213609 | 1..74 | 96 | -> | Plus |
| 3R | 31213672..31213755 | 75..158 | 100 | -> | Plus |
| 3R | 31213814..31214276 | 159..621 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:19:35 Download gff for
MXO03311.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27039257..27039331 | 1..74 | 96 | -> | Plus |
| arm_3R | 27039394..27039477 | 75..158 | 100 | -> | Plus |
| arm_3R | 27039536..27039998 | 159..621 | 99 | | Plus |
