MXO03313.5prime Sequence
740 bp (614 high quality bases) assembled on 2007-06-15
> MXO03313.5prime
CAGTCGACATGGCAACAGTGGTCTTTCTGTCGCGCCAGCGATTGCTTGCC
TGCTCCTTGCGGCTGTTCGGTGGCGCCCACTCAAGGTGCCTGTCGACGAT
GTCCGAGACTAGTCCAACAAGTCTGGCTAGTGATTCCTGGCCTCTCGCGA
ATCGCCGTAACCTGCTCCTGCCCACCGTCAACATCCGCTTCAACCACAAG
TCGGCGAACCCGGCGGCGGCTGCACCAGCGCCCGCCATTAACAACTCGTC
AGCCGGCGGCAAGGATTTGAAGGCCACCAACAGCACCACCTCCAGCGAAC
TCTTTGGCGAGGCGGCAAACATGGGTTTGTTCGCCAAGTTCAAGCACATG
TACAAACAGTACTGGTACGTGCTCATCCCGGTGCACGTGCTCTCGTCAGT
GGGCTGGTTTGGAGGCTTCTACTACCTGTCAAAGAGTGGCGTCGATGTGC
CCGCTTTGCTGCAGTACATCCACTTGAGCGAGAACATCATTGAGAAGGTG
CAGGGCTCGGATATGGGGCACTACGCCATCGCCTATCTGTGCTATAAAGT
GGCCACGCCCCTGCGCTACGCCCTTACTTTGGGGTGTACAACCGTATCCA
TTAAGTACCTGGTGCAACACGGCTTCATTAAGCCCATGCCCACAAAAAGC
GAGCTAATAAAGATGTACGAGGACAAGAAGGCCACCCGGGCAAGCGCTAA
GGCGGACAAGGCAGAGAAGGACGAGAGAGAAGCAAGCTTT
MXO03313.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:24:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14613-PA | 726 | CG14613-RA | 1..723 | 9..731 | 3565 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14613-RB | 1755 | CG14613-RB | 246..968 | 9..731 | 3585 | 99.7 | Plus |
| CG14613-RA | 1539 | CG14613-RA | 246..968 | 9..731 | 3585 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22471349..22471776 | 436..9 | 2125 | 99.8 | Minus |
| X | 23542271 | X | 22471141..22471289 | 583..435 | 745 | 100 | Minus |
| X | 23542271 | X | 22470830..22470979 | 731..582 | 735 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:03:07 has no hits.
MXO03313.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:24:06 Download gff for
MXO03313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14613-PA | 1..726 | 9..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:15 Download gff for
MXO03313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14613-RA | 240..968 | 4..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:44 Download gff for
MXO03313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14613-RA | 240..968 | 4..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:44 Download gff for
MXO03313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22470830..22470978 | 583..731 | 99 | <- | Minus |
| X | 22471142..22471287 | 437..582 | 100 | <- | Minus |
| X | 22471349..22471782 | 4..436 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:15 Download gff for
MXO03313.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21872666..21872814 | 583..731 | 99 | <- | Minus |
| arm_X | 21872978..21873123 | 437..582 | 100 | <- | Minus |
| arm_X | 21873185..21873618 | 4..436 | 99 | | Minus |
