MXO03315.5prime Sequence
615 bp (602 high quality bases) assembled on 2007-06-15
> MXO03315.5prime
CAGTCGACATGACCGCCGTGTTCCGCGTAGGACTGGTGCGGCTCGTCAGC
CGCGCCACACAGTCGCCCAATCTACTCCAGGCGCAGACGAATGCCCTGCC
TGCTGCCTTCCAGCAGCGATGCAGCATCTCCGGCAAGACGATGCGAGGTG
GACCACGGGTGCCCAAGGCCGCCCCCTATCCGTACAAGACGAAGAAGTAC
AGCGTGTTCAATGCTATTTTCGACAAGACCTCCAAGCGTTTTGACGAGAA
CTCCAAGGTGATCTGTGTGGAGGGACCCATCGCGGCCGGCAAGTCAAAGT
TCGCCAAGGAACTGGCTGAGGAGCTGGACATGGAGTACTATCCGGCAGTT
GATCTGGACCTAATCTACATCAATTCGTACGGCTATGACATGAGGAAGTT
GGATCCTCAGTTGCCGCCCAGCTGCCGAAGCTACGATGTGCGCAACTTCT
GCCTGGATCCCAGCCACGATCTGGCTGCCCAGTTCCAGATTCGCATGTAC
ATGCTGCGCTATTCGCAGTACATTGATGCCCTGCAGCACGTCCTTAGCAC
CGGCCAGGGTGTTGTCCTCGAGCGCAGCCCCTACTCGGACTTTGTCTTCA
TGGAGGCCATGTTTC
MXO03315.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:24:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6343-PA | 1224 | ND42-RA | 1..607 | 9..615 | 3035 | 100 | Plus |
| CG6343-PB | 1224 | ND42-RB | 1..607 | 9..615 | 3035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ND42-RC | 1423 | CG6343-RC | 118..724 | 9..615 | 3035 | 100 | Plus |
| ND42-RB | 1618 | CG6343-RB | 313..919 | 9..615 | 3035 | 100 | Plus |
| ND42-RA | 1379 | CG6343-RA | 74..680 | 9..615 | 3035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22028021..22028627 | 9..615 | 3035 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:24:07 has no hits.
MXO03315.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:24:20 Download gff for
MXO03315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6343-PB | 1..607 | 9..615 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:15 Download gff for
MXO03315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND42-RA | 74..680 | 9..615 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:33 Download gff for
MXO03315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND42-RA | 74..680 | 9..615 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:33 Download gff for
MXO03315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22028013..22028627 | 1..615 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:15 Download gff for
MXO03315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17853735..17854349 | 1..615 | 99 | | Plus |
