MXO03317.5prime Sequence
817 bp (782 high quality bases) assembled on 2007-06-15
> MXO03317.5prime
CAGTCGACATGAAATCAGATAACTACCGTCTCATACAGGAGGTGTCCAAG
CGGCGGTGCCTGTGGGACACAAACATGTCCATTTCGTACCGCAACCAGGA
CGCAGCTCTCCAGTGGGCGAGTGTCGCGCAGATAATGCAGCAGGATGTCT
CGATCTGCAAGAAACGTTTCAAGGGAATGCGGGACAGCTACCGGGCAGAG
GTGCGCAAGATACAGCAGAAACGAATCGAGATGTCCCACTGGCCATACTT
TCGCTCACTGGAGTTCATGCGCCAAATCTTCGATCCGGAGGGCCTGGTGC
CCTTTCCACCAGAGCCCTTCGTGATGAACACCGAGCAGCCGGAAGTCTTC
GAGCCCACCCGACTGGTTGACTTCGCTATCGATTTGGATTTGGACAATGA
TGACTCTGTTGACTTTGAAATCATCGAGGACATATTTAAGCGGGAGCCGT
CAGTGCCCCAGGACTCTGGCTCGGATAAAGGCTCGCTGATCAAGCCTTTG
GATTCTTCATCCTCGGGCGCCCATCGTTCCGATCAGGATCTATCGCCCAC
ATTGCCCATACACTTGCCGCGCCACCAACAANTTCCTGCCACGTCCACCC
CCGCCTTCGAAAAAGAGGACATCCGAGGAAAACTTCGCCCGTCTACCAAT
GTCCCCTTATTGAATGGGAACACCAGCCAGGCCTCCAAATCTACCACTGA
ACCCGATCTAAAGAACGATTCGGACTTGAGTTTCTTGATGAGCATGATGC
CGCACGTAAAGTCTCTGTCAGCCATTAGCAATCTTAAGTTTCGAATGGAG
ATGGCGCGCGTTCTGGT
MXO03317.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:24:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11723-PA | 1053 | CG11723-RA | 1..573 | 9..581 | 2865 | 100 | Plus |
| CG11723-PA | 1053 | CG11723-RA | 638..806 | 649..817 | 695 | 96.4 | Plus |
| CG11723-PA | 1053 | CG11723-RA | 574..602 | 583..611 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11723-RB | 1907 | CG11723-RB | 251..1057 | 8..817 | 3810 | 98.3 | Plus |
| CG11723-RA | 1707 | CG11723-RA | 251..1057 | 8..817 | 3810 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2146147..2146814 | 817..147 | 3040 | 97.9 | Minus |
| 2L | 23513712 | 2L | 2146886..2147025 | 147..8 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:46:03 has no hits.
MXO03317.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:24:27 Download gff for
MXO03317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-PA | 1..806 | 9..817 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:50 Download gff for
MXO03317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 243..1057 | 1..817 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:24 Download gff for
MXO03317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 243..1057 | 1..817 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:24 Download gff for
MXO03317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2146147..2146813 | 148..817 | 97 | <- | Minus |
| 2L | 2146886..2147031 | 1..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:50 Download gff for
MXO03317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2146147..2146813 | 148..817 | 97 | <- | Minus |
| arm_2L | 2146886..2147031 | 1..147 | 97 | | Minus |
