MXO03319.5prime Sequence
619 bp (565 high quality bases) assembled on 2007-06-15
> MXO03319.5prime
CAGTCGACATGCTAATAAATCATTTAATAGTCGTATTATTAATTAGTTTG
GTAGGAACAGGAGGTGCAGAAGATGACGGACTTTGCAGTGCCGATCAAAA
ATCCTGTGCACAAAGTGAACCCGACCAAATAAACGAGGATGAATTTAGCT
TCAAGATACGTCGCCAGATCGAAAAAGCCAATGCCGACTACAAGCCGTGC
AGCAGTGATCCCCAGGACAGCGACTGCTCCTGCCACGCAAATGTTCTGAA
ACGGGATCTCGCGCCCTACAAGTCAACAGGTGTCACCCGGCAGATGATCG
AGAGTTCAGCGCGTTACGGCACCAAATACAAGATCTACGGACATCGCCTG
TACCGGGATGCCAACTGCATGTTCCCAGCCCGCTGTGAGGGCATTGAACA
CTTCCTGCTGCCGCTGGTGGCTACGCTGCCCGACATGGACTTGATCATCA
ATACCAGGGACTATCCGCAGCTGAATGCGGCGTGGGGTAACGCGGCTGGT
GGTCCCGTCTTCTCCTTCTCCAAGACAAAGGAGTACCGCGACATCATGTA
TCCAGCGTGGACATTCTGNGGCCGGAGGACCGGCCACCAAGCTCCATCCT
CGTGGCATTGGACGCTGGG
MXO03319.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:24:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31152-PA | 1236 | CG31152-RA | 1..560 | 9..568 | 2800 | 100 | Plus |
| CG31152-PA | 1236 | CG31152-RA | 561..610 | 570..619 | 250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rumi-RA | 1534 | CG31152-RA | 74..683 | 9..619 | 3030 | 99.8 | Plus |
| rumi-RB | 1530 | CG31152-RB | 74..679 | 9..619 | 2960 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22749865..22750338 | 619..145 | 2325 | 99.8 | Minus |
| 3R | 32079331 | 3R | 22750389..22750524 | 144..9 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:59:23 has no hits.
MXO03319.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:24:34 Download gff for
MXO03319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31152-PA | 1..610 | 9..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:08 Download gff for
MXO03319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rumi-RA | 67..683 | 1..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:37 Download gff for
MXO03319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rumi-RA | 67..683 | 1..619 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:37 Download gff for
MXO03319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22749865..22750338 | 145..619 | 99 | <- | Minus |
| 3R | 22750389..22750531 | 1..144 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:08 Download gff for
MXO03319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18575587..18576060 | 145..619 | 99 | <- | Minus |
| arm_3R | 18576111..18576253 | 1..144 | 97 | | Minus |
