MXO03328.5prime Sequence
633 bp (607 high quality bases) assembled on 2007-06-15
> MXO03328.5prime
CAGTCGACATGGCTGAAGCTGTAAAAAATGAAAGTGGCTCCCAACAACGA
CCTTTGGATAGCGGCGGAGGAGGGGGCGCCAGTGGCGGAGGCGGTGTCGC
TGTAGGAGGCGGCTCGGGAATGCCGAAGAGGAAACATCGGCGGGGAAAAA
AATCCAAGATGCAGCCCAAGAAGACCAAGAACCATTATCCGCAGTGGAAA
CTCGATATGTCAACGGGTGCAGGAGCAACGCTGGAGGGGAATCAACGACA
GAATAGCAGAACCAAGCTGGTTCGTTCGCGCTCCTTGCTCGTTCCGTACA
ACACGAACCGCTTCCTAATGGAGGAACACATGTCGGAGCTGCACAAAGAT
GACTCCGACGACAACTGTTTTGGCTCCCAGACCGAAGATCATGTGCTCTT
CCTTTCCAAGGAGTTCTCCGATGTCTACGAGCGAGCGCGGCTCGAACGTT
TGGAGACGATGAGCAAGCAGGAGCTCATCCAGGAGTGCATGCAAATCGAA
GATCGATATTCGAAGGCCCAGAACATATCCAAGGAGTTTGGAGCCAAATT
ACGAGCGCAGGATGATAAGATTCGCCAACTATCACGTGAGAATCAATTTC
TGCGCACCCACCTCTTGCGCACGTGTTCCCGCG
MXO03328.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:25:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3508-PA | 1050 | CG3508-RA | 1..621 | 9..629 | 3080 | 99.8 | Plus |
| CG3508-PB | 1083 | CG3508-RB | 55..654 | 30..629 | 2975 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hexim-RA | 1515 | CG3508-RA | 122..744 | 7..629 | 3100 | 99.8 | Plus |
| Hexim-RB | 1548 | CG3508-RB | 173..777 | 25..629 | 2995 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14659743..14660317 | 30..604 | 2830 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:56:50 has no hits.
MXO03328.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:25:15 Download gff for
MXO03328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3508-PA | 1..624 | 9..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:19:56 Download gff for
MXO03328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hexim-RA | 113..744 | 1..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:54 Download gff for
MXO03328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hexim-RA | 116..747 | 1..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:54 Download gff for
MXO03328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14659744..14660310 | 31..597 | 99 | -> | Plus |
| 3R | 14660375..14660409 | 598..633 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:19:56 Download gff for
MXO03328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10485466..10486032 | 31..597 | 99 | -> | Plus |
| arm_3R | 10486097..10486131 | 598..633 | 97 | | Plus |
