MXO03330.5prime Sequence
622 bp (589 high quality bases) assembled on 2007-06-15
> MXO03330.5prime
CAGTCGACATGTTGAGAGTTTTCGTGATTTTCTCGCTGTTTATAGCGGCC
ATCAATGCCTCTGGCGAATTCACCGTGCTGAACCGTCCCAAGGCAATCAG
TTTCAAGGGCAACGATGCACTGGAAAGCCACTACGTGGGTGATGTACTCT
ACGCTTCCATGGGCAACGCCGTCAGCGGCGATACCAACTGGAACGGACTG
ACCATCAACGATCCCTTCAACCTGGCCAAGGGCGTCATTCTGGTGCATGT
CCAGGGCATTGGTCACGTGACCACCGCCGGCAACGTCAAGACCTACGAGC
TGACAGGCTCCGGAACGGACGCCTCTCTGAACGCCCTGGCCGCCGAACTG
GAGGCAGCCAACGAGCCCGTCTGCGATATTAACTTTGAGCAGTTCGACGA
TGGCGTTCAAGCCTGGAAGTCCTGCTTTGGTGATTTCGAGGCCCCAGCCG
CCAAGCCCACCAAGCACCTGAACCCCTCTCTGCACACCGCTGACAAGCAG
TTCCTCCAGGAGGTTGGATTCATCAACAGTGCCGCCGATCATCTGGCTGA
GATGGCCAAGCCCTCGAATGTCCTGATGCTGCGCGTTTCCGTCGATGGAG
TGGCCAAAGCTCATGGCGAAAA
MXO03330.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8444-PA | 963 | CG8444-RA | 1..611 | 9..619 | 3030 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaM8.9-RA | 1468 | CG8444-RA | 88..698 | 9..619 | 3040 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9260991..9261345 | 52..406 | 1775 | 100 | Plus |
| 3R | 32079331 | 3R | 9261606..9261820 | 405..619 | 1060 | 99.5 | Plus |
| 3R | 32079331 | 3R | 9260725..9260767 | 9..51 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:09:34 has no hits.
MXO03330.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:25:29 Download gff for
MXO03330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8444-PA | 1..610 | 9..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:26 Download gff for
MXO03330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaM8.9-RA | 88..697 | 9..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:32 Download gff for
MXO03330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaM8.9-RA | 88..697 | 9..618 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:32 Download gff for
MXO03330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9260725..9260767 | 9..51 | 100 | -> | Plus |
| 3R | 9260991..9261343 | 52..404 | 100 | -> | Plus |
| 3R | 9261606..9261819 | 405..618 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:26 Download gff for
MXO03330.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5086447..5086489 | 9..51 | 100 | -> | Plus |
| arm_3R | 5087328..5087541 | 405..618 | 99 | | Plus |
| arm_3R | 5086713..5087065 | 52..404 | 100 | -> | Plus |
