MXO03331.5prime Sequence
348 bp (231 high quality bases) assembled on 2007-06-15
> MXO03331.5prime
CAATCGACATGTCGATGTTTTGGGGCTCGTTAAGAGGCCTGAGCGCAAAT
ACTCGTATACGATCATCAAGTCGTTCCACATCTAGGGCGTGGCACTCGAC
TTCCCCCAGGAGGCCAAGTTGTACCTCGATGCCGAGAACCAGGATTACAT
CGTGGCCACCGTGACCAAGGCCATTCCACAGGTTGCGCTCGACCTGAACT
TCATCAAGGGCGATCGCATCATGTTCTACACCGCCGGCGACGCCAGCGTT
TCTCTGTTGGGCTACTTGCACGACATTGATTCCGAATATGATGAGGATGA
CGATCAAATGACGATCGAAAATTTGGTGAATTCCTATGTGATCAAGAA
MXO03331.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:25:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6226-PA | 1074 | FK506-bp1-RA | 99..318 | 106..325 | 950 | 97.2 | Plus |
| CG6226-PA | 1074 | FK506-bp1-RA | 30..93 | 37..100 | 220 | 93.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FK506-bp1-RA | 1299 | CG6226-RA | 106..446 | 9..348 | 1290 | 92.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15332615..15332815 | 237..37 | 810 | 93.5 | Minus |
| 3R | 32079331 | 3R | 15332437..15332549 | 348..236 | 460 | 93.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:01:57 has no hits.
MXO03331.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:25:36 Download gff for
MXO03331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6226-PA | 1..339 | 9..346 | 92 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:15 Download gff for
MXO03331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FK506-bp1-RA | 102..446 | 1..348 | 91 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:50 Download gff for
MXO03331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FK506-bp1-RA | 102..446 | 1..348 | 91 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:50 Download gff for
MXO03331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15332437..15332548 | 237..348 | 93 | <- | Minus |
| 3R | 15332616..15332820 | 33..236 | 92 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:15 Download gff for
MXO03331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11158159..11158270 | 237..348 | 93 | <- | Minus |
| arm_3R | 11158338..11158542 | 33..236 | 92 | -> | Minus |
