MXO03334.5prime Sequence
625 bp (623 high quality bases) assembled on 2007-06-15
> MXO03334.5prime
CAGTCGACATGCAGTCCATTCTGTCTTCAATGAGGGCACTGGCCCTGCGC
CAGAGCACGGTGGAGCCCCTCCGCCTGCTGCATCTTTCCGCCGTGAGCGA
GGCGGCCCGTAAAGGAACTCGGGAGAAGGCCCGCAAGAAGAAAGTCAAGG
TGGAAGTGAAGAAGGTTGGATTCATCCCGCACAACCAGCGCAACAAGAAA
ATCAATGTGAAACGGGCGGACAAACATGTGGATGACTCCTGGAAACAGGT
GCCCAAAGATGACTGCTATGTGGGGCGCTACTACCGCTGGCCAGTGTACT
CGGTGCAGGAAGCTATCCAGTGCCATCGGGAGACGCATCATCCCAGCATG
TACAACGTACCCAATGCTCCCCTCAATTTGGATATTGAACTCTACATGCA
GGCGGAGAAGATCACACGTTTTGTGGATAACTTCCAGCGCATGGCCATGA
TTCCACACAAGTTTGACCACGGCGAGGAGCGGAAGATCATAGTTTTCACC
AAGGGAAATAATGAAGTCCTGGAGGCCAGGGAAGCTGGCGCCTCGCTAGT
CGGCGGCGTGGAGCTCATTAAGGATATTACCAGCGGCGAGCTGCTGCTCT
CCGACTACCAGTACGTCATTGCCCA
MXO03334.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7494-PA | 1065 | mRpL1-RA | 1..617 | 9..625 | 3060 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL1-RA | 1220 | CG7494-RA | 73..689 | 9..625 | 3070 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8301757..8302066 | 200..509 | 1535 | 99.7 | Plus |
| 3R | 32079331 | 3R | 8301512..8301702 | 9..199 | 955 | 100 | Plus |
| 3R | 32079331 | 3R | 8302124..8302239 | 510..625 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:00:57 has no hits.
MXO03334.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:25:50 Download gff for
MXO03334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7494-PA | 1..616 | 9..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:11 Download gff for
MXO03334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL1-RA | 70..688 | 6..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:47 Download gff for
MXO03334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL1-RA | 70..688 | 6..624 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:47 Download gff for
MXO03334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8301509..8301702 | 6..199 | 99 | -> | Plus |
| 3R | 8301757..8302066 | 200..509 | 99 | -> | Plus |
| 3R | 8302124..8302238 | 510..624 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:11 Download gff for
MXO03334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4127231..4127424 | 6..199 | 99 | -> | Plus |
| arm_3R | 4127479..4127788 | 200..509 | 99 | -> | Plus |
| arm_3R | 4127846..4127960 | 510..624 | 100 | | Plus |
