MXO03336.5prime Sequence
680 bp (606 high quality bases) assembled on 2007-06-15
> MXO03336.5prime
CAGTCGACATGGCCAGCTCACCCATCACAGACTTCTATGCGGGTCGCAAT
GTCTTCATCACGGGCGCCACTGGCTTCGTGGGCGTCACCATTGTGGAGAA
ACTATTGCGCGATGTTCCCAACGTGGGCACACTGTACCTGCTGATGCGCG
CCAAGAAGGGCAAGAGTGTGCAGGAGCGACTGGAGGAGCTGAAGAAGAAC
TCCGTTTTCGACAAGTTCAAGGAACTGCAGCTGCAGTCGCGTCTCTCCAA
GATCGTGCCCATCGAAGGCGATGTCGGCTTGGAGCATCTGGGCATCTCGC
CGAAGGATCGCCAGACCCTGATCGACAACGTGAATGTTGTCTTTCACTCG
GCTGCCACTTTGGACTTCTTTCAATCTCTGAAGGAGACCACCAACATCAA
CTTGAGGGGCACTCGGCGAGTTGTGGAGCTGTGCCAGCAGATCAAGAACC
TGGATGCTTTGGTCCATGTGTCCAGCGCCTATGTGAATGCCTATCTGACC
AAGGTCGAGGAGAAGCTATATCCCGCGCCCGAAGATCCAGAGAAGATCAT
CCAGCTCTCGGAGACGCTCAACGATGATGCCCTCAAGGAACTGGAACCAA
AACTTCTGAAGGATCACCCCAATACCTATACCTTTACAAAGCATCTGGCG
GAGCACGAGGTGGCCAATGTGGCCAGCAAG
MXO03336.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8306-PA | 1551 | CG8306-RA | 1..672 | 9..680 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8306-RA | 2211 | CG8306-RA | 556..1228 | 8..680 | 3365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16590826..16591413 | 601..14 | 2940 | 100 | Minus |
| 2R | 25286936 | 2R | 16590684..16590762 | 680..602 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:02:06 has no hits.
MXO03336.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:26:04 Download gff for
MXO03336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8306-PA | 1..672 | 9..680 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:26 Download gff for
MXO03336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8306-RA | 556..1228 | 8..680 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:59 Download gff for
MXO03336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8306-RA | 556..1228 | 8..680 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:59 Download gff for
MXO03336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16590684..16590762 | 602..680 | 100 | <- | Minus |
| 2R | 16590826..16591410 | 17..601 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:26 Download gff for
MXO03336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12478189..12478267 | 602..680 | 100 | <- | Minus |
| arm_2R | 12478331..12478915 | 17..601 | 100 | <- | Minus |
