MXO03338.5prime Sequence
619 bp (589 high quality bases) assembled on 2007-06-15
> MXO03338.5prime
CAGTCGACATGGAAAAGGAATCCAATTTATCGGACAACTTGCAGTCCCGG
TTATTTGCACTGGGTCCTGCCCCGCCAGGATTTCGTCCACCGGATGCTAC
CGCCTTTGCCACAGCGGAGTCAAATCTTCGTAATGCCATCCGCTACCTTA
ATGATACCTATGGCGAGCTCGATCAGCTGCGCACTGTCATCCAGAAGGAG
AAGAATAACTCGAAGCGTACGTCCTACAAGGCGCAGTCCATGATGCTTGC
CATGCAAGTGATACGTTTCAAAGGACTTATTGGGAAGTACAGGGACATTC
TGATTGGCCTGCAGGATGCCGAAATCATCAAGGTCAAACAATACATAGAG
CAAATGGTGGAGATGAGGAACAAAATCCAGGCAAAGACCGATCCCACACA
GCGCGAGTTCCAAGTGGGCAGCTCAATCTCACTGGTGCAGGAACAGCGCA
AGACCAAGAGAATCTGCCGCAGGTGGCGGGATCGCCTGGTCCAGCTGACG
GAGGCCAAGATGGACAAAACTGAGCAACTTACTGAGAAACCAAAGCTGAT
CAATAAACCTAGAAATATGTTAAATGCAAAAACCAACAAGTGGGAAGGAA
GCTGTAAGCTTGCAACAAA
MXO03338.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:26:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3217-PA | 1164 | CkIIalpha-i3-RA | 1..585 | 9..593 | 2925 | 100 | Plus |
| CG3217-PB | 1176 | CkIIalpha-i3-RB | 49..597 | 45..593 | 2745 | 100 | Plus |
| CG3217-PA | 1164 | CkIIalpha-i3-RA | 584..610 | 593..619 | 135 | 100 | Plus |
| CG3217-PB | 1176 | CkIIalpha-i3-RB | 596..622 | 593..619 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIIalpha-i3-RC | 1540 | CG3217-RC | 325..934 | 9..619 | 3030 | 99.8 | Plus |
| CkIIalpha-i3-RA | 1275 | CG3217-RA | 60..669 | 9..619 | 3030 | 99.8 | Plus |
| CkIIalpha-i3-RB | 1289 | CG3217-RB | 53..626 | 45..619 | 2850 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 709738..710283 | 554..9 | 2730 | 100 | Minus |
| 3L | 28110227 | 3L | 709557..709613 | 612..555 | 240 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:59:44 has no hits.
MXO03338.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:26:17 Download gff for
MXO03338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3217-PA | 1..607 | 9..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:21 Download gff for
MXO03338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i3-RA | 77..683 | 9..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:49 Download gff for
MXO03338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i3-RA | 60..666 | 9..616 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:49 Download gff for
MXO03338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 709552..709613 | 555..616 | 92 | <- | Minus |
| 3L | 709738..710283 | 9..554 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:21 Download gff for
MXO03338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 709552..709613 | 555..616 | 92 | <- | Minus |
| arm_3L | 709738..710283 | 9..554 | 100 | | Minus |
