MXO03339.5prime Sequence
592 bp (585 high quality bases) assembled on 2007-06-15
> MXO03339.5prime
CAGTCGACATGTGCAGCTTGGACGTAAGACGCTTCTTCGAGGAGTGGCGC
ATCTGGATACGCCCGCTGCTCATTATCACCTATGTCATCTTCGCCATCAT
CGTGGTCCCGCTGCTCATTGTGAACTCCGTGAAGGATGGCTTCCAGCGCA
ATGACCAGCTCATTCTCATCGGCGGTCTGTTTGTGTTGTCCGCAGTGCCC
GTGTCCATTTGGCATATCATCCAACACGTCATTCATTTTACCAAGCCCAT
ACTGCAGAAGCACATAATCCGCATATTGTGGATGGTGCCTATCTACGCCT
TGAACGCGTGGATCGGCCTTTTCTTTCCGAAGCACTCCATCTACGTGGAC
TCACTGCGCGAGTGCTACGAGGCGTACGTTATCTACAACTTCATGGTGTA
CCTGCTCAACTACTTGAATCTCGGTATGGACCTAGAGGCCACAATGGAGT
ACAAGCCGCAGGTGCCTCACTTCTTTCCGCTCTGCTGCATGCGGCCGTGG
GTGATGGGTCGTGAATTCATCCACAACTGCAAGCACGGCATCCTCCAGTA
CACGGTCGTGCGCCCCATTACCACCTTTATCTCTGTCATCTG
MXO03339.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:26:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5850-PB | 1710 | CG5850-RB | 1..584 | 9..592 | 2920 | 100 | Plus |
| CG5850-PA | 1476 | CG5850-RA | 1..584 | 9..592 | 2920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5850-RC | 2935 | CG5850-RC | 558..1141 | 9..592 | 2920 | 100 | Plus |
| CG5850-RG | 2744 | CG5850-RG | 364..947 | 9..592 | 2920 | 100 | Plus |
| CG5850-RF | 2678 | CG5850-RF | 364..947 | 9..592 | 2920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9963093..9963392 | 308..9 | 1500 | 100 | Minus |
| 2L | 23513712 | 2L | 9962735..9963013 | 586..308 | 1395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:41:44 has no hits.
MXO03339.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:26:24 Download gff for
MXO03339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5850-PA | 1..584 | 9..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:57 Download gff for
MXO03339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5850-RF | 356..947 | 2..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:36 Download gff for
MXO03339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5850-RF | 356..947 | 2..592 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:36 Download gff for
MXO03339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9962730..9963012 | 309..592 | 98 | <- | Minus |
| 2L | 9963093..9963400 | 2..308 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:57 Download gff for
MXO03339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9962730..9963012 | 309..592 | 98 | <- | Minus |
| arm_2L | 9963093..9963400 | 2..308 | 98 | | Minus |
