MXO03340.5prime Sequence
626 bp (596 high quality bases) assembled on 2007-06-15
> MXO03340.5prime
CAGTCGACATGGAGAACTTTAAGGGTCTACAAAAATCCCTATACATATGG
ACGGACAGCGCCGACTTGGACAAGCGCGTGGAGCAACTAAAGGCGGCCAC
TGGCGGCGATGTGGCTTTGGAAAATGTGCACCGCCTTTCGTTTTCTTCCT
ATGCCAACTCCAGTTTCGACCTGATTGTGATCGAGTGCGCCCAGCTGACC
GACAGTTACGTAAAACTGCTGCACATGCTGAAACCGAGTGGCAAACTGCA
TTTGGTGTCCTACATCGGTCCGGCGGCTAGTTTGCTGCAGGAGATCAAGC
TATCCGGATTCATAAACTGTCGCGAGGACTCTCCAGATGCTTTGACCGCC
GAGAAGCCTGGCTACGAGACAGGATCCTCAGCCAGGTTGTCATTCGCAAA
GAAGAACGCCAGTGCAGTCAATGTGTGGAAGATAAGCGGTGACGATGAGG
AACTGATCGATGAGGAGGAGCTGCTGGACGAGGAAGACAAACAGAAGCCG
GATCCGGCTGGTCTGCGTGTCTGTAGCACCACGGGCAAGCGCAAGGCGTG
CAAAAACTGCTCCTGCGGGCTGGCCGAGGAATTGGAGACTGAAAAACAGA
GCCAGAAGGCCACCGAAAATGCCAAG
MXO03340.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4180-PA | 747 | l(2)35Bg-RA | 1..618 | 9..626 | 3065 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CIAPIN1-RA | 2358 | CG4180-RA | 87..704 | 9..626 | 3075 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15038069..15038550 | 626..145 | 2395 | 99.8 | Minus |
| 2L | 23513712 | 2L | 15038640..15038775 | 144..9 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:41:51 has no hits.
MXO03340.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:26:30 Download gff for
MXO03340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4180-PA | 1..618 | 9..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:02 Download gff for
MXO03340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CIAPIN1-RA | 79..704 | 1..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:38 Download gff for
MXO03340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CIAPIN1-RA | 79..704 | 1..626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:38 Download gff for
MXO03340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15038069..15038550 | 145..626 | 99 | <- | Minus |
| 2L | 15038640..15038783 | 1..144 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:02 Download gff for
MXO03340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15038069..15038550 | 145..626 | 99 | <- | Minus |
| arm_2L | 15038640..15038783 | 1..144 | 97 | | Minus |
