MXO03343.5prime Sequence
616 bp (609 high quality bases) assembled on 2007-06-15
> MXO03343.5prime
CAGTCGACATGGGATCCAAAGTGGAGCAGCAGTACAAGCTGCTGAATGCG
GAGCTAATGGACCAAGTGCAGAAGCAGCGCTTAGAGATCGGCGAGTACAG
GAAGCGGGTGATATCTTTGGAGCGAGAGATCATGGACATTCGGGAGGAGC
ACGTCCTGCAAAACCATCGCCAGCGCATGGAGAACATCAGTATCGTACGC
AGCCTGATGCTGAGCCTGAACGTGGACTCCGATTCCCTGGCAGTGCGTCA
GGAGCCCGCTCCCGCAGCTCAGATAAACAGACCAAGCGGCCCGCGTCGCA
GCTCCAGGGAAATCTGCAAGGACATGCGACGGACGTGTGCGTTGGCCCGC
ACCACCAGACCAATCTCGCCAAGAAGATCTTCCTCAGTGACCAGTACTGT
ATCGTCCACTAGTCGCCGCTCCAGCGCAGAAGTGCAGTCCGAGGTGGTGA
CCACTAGGATACCAGAGGATAGAAGAGCCAACAAGCCTACACCACCGCCA
CGAAGACCAGCGGAATTAGTGTTTGATGAGGACGACTCGGACGATGATTT
CGACGAAGCAGTAAGCCCCGTGGAGGAGACACAGACTGAGCAAAATGAAG
AGAACAATCGTCTGTT
MXO03343.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:26:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5303-PA | 1206 | mei-S332-RA | 1..608 | 9..616 | 3015 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mei-S332-RB | 1594 | CG5303-RB | 87..694 | 9..616 | 3025 | 99.8 | Plus |
| mei-S332-RA | 1504 | CG5303-RA | 196..803 | 9..616 | 3025 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22122998..22123474 | 9..485 | 2370 | 99.8 | Plus |
| 2R | 25286936 | 2R | 22123534..22123666 | 484..616 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:24:12 has no hits.
MXO03343.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:26:44 Download gff for
MXO03343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5303-PA | 1..608 | 9..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:19 Download gff for
MXO03343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-S332-RA | 190..803 | 1..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:38 Download gff for
MXO03343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-S332-RA | 190..803 | 1..616 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:38 Download gff for
MXO03343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22122992..22123474 | 1..485 | 98 | -> | Plus |
| 2R | 22123536..22123666 | 486..616 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:19 Download gff for
MXO03343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18010497..18010979 | 1..485 | 98 | -> | Plus |
| arm_2R | 18011041..18011171 | 486..616 | 100 | | Plus |
