MXO03346.5prime Sequence
612 bp (611 high quality bases) assembled on 2007-06-15
> MXO03346.5prime
CAGTCGACATGTCCACGAGATCTTCATTCGCCGATGAAGAGCAGAACAAA
GTGCCCCGTATCATGACCTTCCGTCCCAGCTACGAGGAGTTTCAAAATTT
TTCCGCCTACATTGAGTACATTGAGTCTCGGGGAGCACACTTAGCCGGCT
TGGCCAAAATCCAACCACCTGCGGAATGGGTGCCCCGAAAGTCGGGCTAC
GACATAGACAACATCAACATGACCATTCCAGCGCCGATTTGCCAAGTAGT
CACTGGGGCGCACGGGGTGTACCAGCAAATCAACATCCAGCAGCGCCGGC
AGATGACCTTGCGCCAATTCATGGAGAAGGCCAACTCGGAGCTGCACCAG
ACACCGAGGCACTTCGACTACGACGATCTGGAGCGCAAGTACTGGAAGAA
CATCACCTACATATCGCCACTGTATGCAGCCGATGTCAAGGGATCGCTGA
GTGATGAAGACCTTGACGTTTGGAACATTGGACGCTTGGACACCATATTA
AACTTGGTCAACACTGACTACAACATAATCATCGATGGGGTAAACACGGC
TTACCTCTACTTTGGCATGTGGAAGAGCTCTTTTGCCTGGCATACCGAGG
ACATGGATCTGT
MXO03346.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:27:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15835-PA | 1488 | CG15835-RA | 1..604 | 9..612 | 3020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kdm4A-RB | 2004 | CG15835-RB | 73..676 | 9..612 | 3020 | 100 | Plus |
| Kdm4A-RA | 2022 | CG15835-RA | 73..676 | 9..612 | 3020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7924177..7924533 | 612..256 | 1785 | 100 | Minus |
| 2R | 25286936 | 2R | 7924761..7924916 | 164..9 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 7924597..7924689 | 257..165 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:04:26 has no hits.
MXO03346.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:27:06 Download gff for
MXO03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15835-PA | 1..604 | 9..612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:41 Download gff for
MXO03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kdm4A-RA | 65..676 | 1..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:03 Download gff for
MXO03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kdm4A-RA | 65..676 | 1..612 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:03 Download gff for
MXO03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7924177..7924532 | 257..612 | 100 | <- | Minus |
| 2R | 7924598..7924689 | 165..256 | 100 | <- | Minus |
| 2R | 7924761..7924923 | 1..164 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:41 Download gff for
MXO03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3811682..3812037 | 257..612 | 100 | <- | Minus |
| arm_2R | 3812103..3812194 | 165..256 | 100 | <- | Minus |
| arm_2R | 3812266..3812428 | 1..164 | 97 | | Minus |
