MXO03349.5prime Sequence
721 bp (616 high quality bases) assembled on 2007-06-15
> MXO03349.5prime
CAGTCGACATGGTGGATCGCAGCGATAATGCAGCGGAATCCTTCGACGAC
GCCGTCGAGGAGCGCGTGATCAATGAGGAGTATAAGATTTGGAAAAAGAA
CACGCCGTTCCTGTACGATCTGGTCATGACGCATGCCCTGGAATGGCCCT
CGTTGACTGCCCAGTGGCTGCCGGACGTGACCAAGCAGGATGGCAAGGAC
TACTCGGTACATCGTCTTATACTGGGCACACACACATCTGACGAGCAGAA
CCATCTACTCATCGCCAGCGTTCAGTTGCCCAGCGAGGATGCCCAGTTCG
ATGGTTCGCACTACGATAACGAGAAGGGCGAGTTTGGAGGCTTTGGATCG
GTGTGCGGCAAAATCGAAATCGAGATTAAGATCAACCACGAGGGCGAAGT
GAACAGGGCCCGCTACATGCCCCAGAACGCCTGTGTAATCGCCACCAAGA
CGCCGTCGAGTGATGTCCTGGTCTTCGACTACACGAAGCATCCCAGCAAG
CCGGAACCGTCTGGCGAGTGCCAGCCTGACCTGCGGCTGCGCGGTCATCA
AAAGGAAGGCTACGGACTCTCTTGGAATCCCAACCTCAATGGCTATTTGC
TGTCAGCCTCTGATGATCACACCATCTGCTTGTGGGACATCAATGCCACA
CCCAAGGAGCATAGGGTTATTGATGCCAAGAACATCTTCACCGGCCACAC
CGCCGTTGTTGAGGACGTGGC
MXO03349.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:27:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4236-PA | 1293 | Caf1-RA | 1..713 | 9..721 | 3565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Caf1-RA | 1828 | CG4236-RA | 313..1030 | 4..721 | 3575 | 99.9 | Plus |
| Caf1-RB | 1825 | CG4236-RB | 313..1027 | 4..721 | 3520 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15225965..15226527 | 30..592 | 2815 | 100 | Plus |
| 3R | 32079331 | 3R | 15226636..15226766 | 591..721 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:48:31 has no hits.
MXO03349.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:27:18 Download gff for
MXO03349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4236-PA | 1..713 | 9..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:51 Download gff for
MXO03349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Caf1-RA | 311..1030 | 1..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:38 Download gff for
MXO03349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Caf1-RA | 311..1030 | 1..721 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:38 Download gff for
MXO03349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15225966..15226526 | 31..591 | 100 | -> | Plus |
| 3R | 15226637..15226766 | 592..721 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:51 Download gff for
MXO03349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11051688..11052248 | 31..591 | 100 | -> | Plus |
| arm_3R | 11052359..11052488 | 592..721 | 100 | | Plus |
