Clone MXO03351 Report

Search the DGRC for MXO03351

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:33
Well:51
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG5037-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03351.5prime Sequence

594 bp (591 high quality bases) assembled on 2007-06-15

> MXO03351.5prime
CAGTCGACATGATATTATTCAAAGGAATTCGGCGGGTGCAATCCCAGCTA
AGAACGCCGGTTGATTTGGTGCTCATTCGGTACTCCACTGCAGCAACGAT
AGCTTCCCAAGATGACAAAGGTGTCACTACAGCGTCGCCAGTATCCCAGG
CGGGAAAGGTCCAGCATTTACCCGATAGTCAAATTACCTGGATGCCTAGT
CCGTACACCATGCCCGGAAAAACTCTTAGCCAGTACAAGAAGCTATCCAA
GTTCCGGCTGACATCGCTGGTGGTCATTACAACGATGGGCGGCTATGCCA
TGGCGCCAGCTGCTTTCGATCCCACAACGTTTGCGATGTGCACCCTGGGC
ACAGGACTCGTTTCGGCTGCGGCGAATGCCATTAATCATTATCTCGAACT
TCCTTTCGATTCGCAGATGTCGAGGACAAAGAACCGGGTGCTCGTCACGG
GGCAAATGACACCACTGCATGCAGTTACCTTCGCCGCGGTGTCGGCAACT
GCCGGCTTAAGTATGCTGTATTTCGGAGTAAATGGATTGACGGCGGCGCT
GGGAGCGGGTAACCTGTTCCTCTACACCACGATATACACACCGA

MXO03351.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5037-PA 1176 CG5037-RA 1..586 9..594 2855 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5037-RA 1473 CG5037-RA 140..725 9..594 2885 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10331988..10332317 265..594 1605 99.1 Plus
2L 23513712 2L 10331742..10331930 76..264 930 99.5 Plus
2L 23513712 2L 10331610..10331681 9..80 360 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:13:51 has no hits.

MXO03351.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:27:25 Download gff for MXO03351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5037-PA 1..585 9..593 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:23 Download gff for MXO03351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 140..724 9..593 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:38 Download gff for MXO03351.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5037-RA 140..724 9..593 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:38 Download gff for MXO03351.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10331610..10331681 9..80 100 -> Plus
2L 10331747..10331930 81..264 100 -> Plus
2L 10331988..10332316 265..593 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:23 Download gff for MXO03351.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10331988..10332316 265..593 99   Plus
arm_2L 10331610..10331681 9..80 100 -> Plus
arm_2L 10331747..10331930 81..264 100 -> Plus