MXO03352.5prime Sequence
591 bp (586 high quality bases) assembled on 2007-06-15
> MXO03352.5prime
CAGTCGACATGGCCGGAGGAAGTCGCCCTCTCCAATTAGTTCTCCTGGTC
CTAGTTGCGCTCGCCCAATGGCAACCCATCGCCGCTGGATTGGTCTCCAA
CGAGGAGCTGCGCGGAACTATCCAGTCGCTGATCTACTCCTACAATCAGC
TGGACAATAAGCTGGAGCGGCACGAGCATCGCGAGCGTGCGTTGGGCGAG
CTGCTCAAGAAGGCGCTGCAGTCGCTCCAGAAGGGCCAGAAGAGCCTGGA
GCCCATCAATGGGATCTTCGGGCGCCTGGACGAGCGGGTCAGCCAGATAG
AGACCATGCTGATCACGCAAGAGGAGAAGTACAACTCGCAGTCGGACCGC
TTCAACCAGGCAACGGAGCACATGTTCAAGTGGATGCGGGAGAACGACGA
CTGCTTCAAGAGGCCGCCGGTCAGCGCCAACATGATCGCTCCCCCAGCCG
CGGCCGCCCCACCCGCCATTCCCAAGGAGTTCCTGGAGGATCAGAAGCGC
CTCAACGCCAAGCTGCTCGAGGAGATCCAGAAGTTGTCGGCCAGCGTGGC
CGCCCTCAAGGAGAGCAGCCAGAAGGCGTCCGATCAGACCC
MXO03352.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:27:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5080-PB | 1665 | CG5080-RB | 1..583 | 9..591 | 2890 | 99.8 | Plus |
| CG5080-PA | 1665 | CG5080-RA | 1..583 | 9..591 | 2890 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5080-RC | 2350 | CG5080-RC | 532..1114 | 9..591 | 2900 | 99.8 | Plus |
| CG5080-RA | 2617 | CG5080-RA | 799..1381 | 9..591 | 2900 | 99.8 | Plus |
| CG5080-RB | 2007 | CG5080-RB | 189..771 | 9..591 | 2900 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1161596..1161870 | 591..317 | 1360 | 99.6 | Minus |
| 2L | 23513712 | 2L | 1161927..1162146 | 317..98 | 1100 | 100 | Minus |
| 2L | 23513712 | 2L | 1163000..1163088 | 97..9 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:12 has no hits.
MXO03352.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:27:32 Download gff for
MXO03352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5080-PA | 1..583 | 9..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:23 Download gff for
MXO03352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5080-RB | 185..771 | 1..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:55 Download gff for
MXO03352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5080-RB | 185..771 | 1..591 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:55 Download gff for
MXO03352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1161596..1161869 | 318..591 | 99 | <- | Minus |
| 2L | 1161927..1162146 | 98..317 | 100 | <- | Minus |
| 2L | 1163000..1163092 | 1..97 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:23 Download gff for
MXO03352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1161596..1161869 | 318..591 | 99 | <- | Minus |
| arm_2L | 1161927..1162146 | 98..317 | 100 | <- | Minus |
| arm_2L | 1163000..1163092 | 1..97 | 95 | | Minus |
