MXO03356.5prime Sequence
811 bp (686 high quality bases) assembled on 2007-06-15
> MXO03356.5prime
CAGTCGACATGAAGCTGCTGGGCAAATACGTGGACAAGGGCATGCAGGGA
AATGTGACCCTGGTGCCGGAGGAGTCCGAGGATATGTGGCACGCCTACAA
TTTGATTGCGAAAGGCGACAGCGTGCGCAGCACCACTATTCGCAAGGTGC
AGAATGAAACGGCTACTGGCTCCTCCACCAGCAGCCGGGTGCGCACCACA
CTAACCATCGCAGTGGAGAGCATAGATTTTGATACGCAGGCTTGTGTGCT
CCGCCTTAAAGGCAGAAACATCGAGGAGAACCAGTATGTCAAGATGGGCG
CCTATCACACCCTCGACCTGGAGCTGAATCGCAAGTTCGAGCTGCGTAAG
CCGGAATGGGACACAATTGCCTTAGAGCGCATCGAAATGGCCTGCGATCC
CACACAGTCTGCGGATGTAGCCGCCGTTGTGATGCAGGAGGGATTAGCAC
ACGTCTGCCTGATCACCGCCAGTATGACCCTGGTGCGGAGCAAGATTGAG
GTCTCCATACCGCGCAAGCGCAAGGGCAGTGTCCAGCAACACGAGAAGGG
ACTGGCCAAGTTCTACGAGCAGGTTATGCAGAGCATCCTGCNGGCACGTC
AACTTCGATGTGGTCAAGTGTGTGTTGATTGCGTCGCCGGGATTCGTGCG
CGATCAGTTCTATGACTACATGTTCCAGCAGGCGGTCAAAATGGATTACA
AGCTGCTGCTGGACAACAAGAGCAAGTTTATGCTGGTGCACGCATCCTCG
GGATTTTAGCACTCCTTAAGAAAAATTCTACAGGATCCCGCCGTGCTGGC
CAAGATGTCTG
MXO03356.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:27:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3959-PA | 1188 | pelo-RA | 1..583 | 9..591 | 2915 | 100 | Plus |
| CG3959-PA | 1188 | pelo-RA | 584..802 | 593..811 | 1045 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pelo-RA | 2045 | CG3959-RA | 244..1045 | 9..811 | 3960 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9701152..9701873 | 49..771 | 3550 | 99.7 | Plus |
| 2L | 23513712 | 2L | 9701053..9701093 | 9..49 | 205 | 100 | Plus |
| 2L | 23513712 | 2L | 9701930..9701968 | 773..811 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:22 has no hits.
MXO03356.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:27:40 Download gff for
MXO03356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3959-PA | 1..802 | 9..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:40 Download gff for
MXO03356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pelo-RA | 235..1045 | 1..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:33 Download gff for
MXO03356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pelo-RA | 235..1045 | 1..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:33 Download gff for
MXO03356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9701044..9701093 | 1..49 | 92 | -> | Plus |
| 2L | 9701153..9701874 | 50..772 | 99 | -> | Plus |
| 2L | 9701930..9701968 | 773..811 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:40 Download gff for
MXO03356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9701044..9701093 | 1..49 | 92 | -> | Plus |
| arm_2L | 9701153..9701874 | 50..772 | 99 | -> | Plus |
| arm_2L | 9701930..9701968 | 773..811 | 100 | | Plus |
