MXO03363.5prime Sequence
613 bp (590 high quality bases) assembled on 2007-06-15
> MXO03363.5prime
CAGTCGACATGTCGGCCGATGTGCGTGATATTCTGGACATGGAGCGTGCC
AACACGCCCGAGGTGACGCGGGATTCGTTTCTGGCCACCAAGAAGCGCAA
CTTTGAGCGGACCAAGACTGCGTCCCGGCGTCCGGAGGGCATGCATAGGG
AGGTGTTTGCCCTGCTCTACACAGACAAGAAAGATGCTCCGCCTCTCCTG
CCCACGGATACCGCTCTGGGAATCGGAGCGGGATACAAAGAGACGAAGGC
CCGCCTGGGCATGAAGAAGGTGCGCAAGTGGGAGTGGGCGCCCTTTTCGA
ATCCGGCACGTAACGATTCGGCGGTTTTTCACCACTGGAAACGAGTCACC
GACAATTCCACCGACTATCCGTTCGCCAAGTTCAACAAGCAACTGGAGGT
GCCCTCGTACACGATGACGGAGTACAATGCCCACTTAAGGAACAACATCA
ACAACTGGAGCAAGGTGCAGACCGATCACCTATTCGACCTGGCCAGAAGG
TTCGATCTTCGCTTCATTGTGATGGCAGATCGTTGGAACCGTCAGCAGCA
TGGAACCAAAACTGTGGAGGAGCTCAAAGAACGCTACTATGAGCGTGGTC
GCTCTGCTCGCCA
MXO03363.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11132-PA | 1302 | DMAP1-RA | 1..585 | 9..593 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DMAP1-RA | 1584 | CG11132-RA | 135..739 | 8..613 | 3005 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20644328..20644720 | 109..501 | 1965 | 100 | Plus |
| 2R | 25286936 | 2R | 20644777..20644891 | 498..613 | 530 | 99.1 | Plus |
| 2R | 25286936 | 2R | 20644170..20644272 | 8..110 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:09:52 has no hits.
MXO03363.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:28:17 Download gff for
MXO03363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11132-PA | 1..603 | 9..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:37 Download gff for
MXO03363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DMAP1-RA | 135..738 | 8..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:06 Download gff for
MXO03363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DMAP1-RA | 135..738 | 8..612 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:06 Download gff for
MXO03363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20644170..20644271 | 8..109 | 100 | -> | Plus |
| 2R | 20644329..20644718 | 110..499 | 100 | -> | Plus |
| 2R | 20644779..20644890 | 500..612 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:37 Download gff for
MXO03363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16531675..16531776 | 8..109 | 100 | -> | Plus |
| arm_2R | 16531834..16532223 | 110..499 | 100 | -> | Plus |
| arm_2R | 16532284..16532395 | 500..612 | 99 | | Plus |
