MXO03369.5prime Sequence
564 bp (373 high quality bases) assembled on 2007-06-15
> MXO03369.5prime
CAGTCGACATGGATACGGAGAAGTCTAGCAGCAGCTCCTTCGAGGACCTG
ACCAACGCCGAGGACACCAAAGACATTCGCAAGGTGGCAGCGGAGGAGGC
AGCCTCCGGAGATGGCGCACCCCCGGCATCCGTTTCTGGAGACGGACAGA
AGGCGGAGGAGGAGGATGCAGAGGAGGAATGTGATATACTGGGTAACAAG
CAGCTGATTAAGCGCACCATCAAAAAGGCACCGCAAGACTCGTTTAGGCG
TCCGATTCGCGGCGAATTGGTCACCGTGAACTTCACTGGAAAACTGGACA
ACGGCACGGTGGTCGAGAACGAGTTGAACTTCCAGTGTCACGTGGGAGAC
TACGAGGTTATCCAAGGATTAGATATGGTGTTGCCCATGCTGTTTGCCCC
CCCACTGTCCCAAGTCAGCGTGGATTCCCGCTTCGGATACGGCTCCCTAG
GACTGAATAAAGAGGGAGAATCCGAGTACCTGGAACCACCCGATGCGCAC
CTTACCTACCAAATAGAGCTTCTGGAAATCAAATACAAAGAATTTGCGGA
CGTTAAGAGCCTTG
MXO03369.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5482-PA | 1194 | CG5482-RA | 1..384 | 9..392 | 1920 | 100 | Plus |
| CG5482-PA | 1194 | CG5482-RA | 398..552 | 406..560 | 575 | 94.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5482-RD | 1780 | CG5482-RD | 303..858 | 9..564 | 2510 | 96.8 | Plus |
| CG5482-RC | 1958 | CG5482-RC | 160..715 | 9..564 | 2510 | 96.8 | Plus |
| CG5482-RB | 1642 | CG5482-RB | 165..720 | 9..564 | 2510 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18631133..18631624 | 500..9 | 2265 | 97.4 | Minus |
| 2R | 25286936 | 2R | 18631015..18631078 | 564..501 | 245 | 92.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:24 has no hits.
MXO03369.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:28:54 Download gff for
MXO03369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-PA | 1..556 | 9..564 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:29 Download gff for
MXO03369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-RA | 154..715 | 3..564 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:02 Download gff for
MXO03369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-RB | 159..720 | 3..564 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:02 Download gff for
MXO03369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18631015..18631078 | 501..564 | 92 | <- | Minus |
| 2R | 18631133..18631630 | 3..500 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:29 Download gff for
MXO03369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14518520..14518583 | 501..564 | 92 | <- | Minus |
| arm_2R | 14518638..14519135 | 3..500 | 96 | | Minus |
