MXO03370.5prime Sequence
831 bp (787 high quality bases) assembled on 2007-06-15
> MXO03370.5prime
CAGTCGACATGGGAACCGAGGAGGAGCTGATGTTCCGCAACTTCCAGCGC
CTGAAAAGCTACATCTTCGACGACGAGAAGGTGTCCACCACCACATCCCG
CGAGCAACAAAAGACGGAGAGTTCGGTGGAGAAATGCTTCGACCGCTTCG
AGCAGATAATGTTCACCGACCCGCGCCTCACCCAGATCTTCCGGCTGGAG
CACCAGTACTACCTGGACGCGATGCTGAGGCGGCTGCCGTCCAATTACGA
GTGCCTGGACAGCAGTCGCGCGTGGTGCGTTTACTGGATCCTGCAGGCGG
CCCAGCTACTTAGCTTTAACTTCGACGACCAGACATTGAACCACGTGGTC
CAGTTTCTAAGCAACTGCCGTTCGCCGACTGGGGGTTTTGGAGGAGGACC
TGGACAGTATGCCCATCTGGCGCCCACCTATGCAGCAGTGAACAGTCTGT
GCATCATCGGAAGCGAGCAGGCGTACCGTGCCATAGACCGACCGACTTTG
GTCCAGTTCCTGTTCAGTGTACGTGACTCAGACGGCTCCTTCCGGCTCCA
CGTGGATGGTGAGACGAGATGTGCGTGGCGCCTACTGCGCAATCTCCTGC
GCAAAGCTGCTAAATCTTCCCGAGCCAGTGATCAAGGAGCTATTTGCCGG
CACTGGCGACTGGATAGCCCAGTGTCAGACATACGAGGGAGGATTTGGAG
GAGCCCCTGGTCTGGAGGCCCATGGTGGCTACACCTTCTGCGGAATCGCG
GGCCTGGCGCTGCTCAACGAGGCTGATAAGTGCGACAGGCAGGCTTTGCT
CAAATGGACACTGCGCCGTCAGATGACCTAC
MXO03370.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17565-PA | 1260 | CG17565-RA | 1..558 | 9..566 | 2790 | 100 | Plus |
| CG17565-PA | 1260 | CG17565-RA | 559..822 | 568..831 | 1320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17565-RA | 1569 | CG17565-RA | 79..907 | 2..831 | 4095 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16433557..16434022 | 365..831 | 2285 | 99.8 | Plus |
| 3R | 32079331 | 3R | 16433234..16433498 | 104..368 | 1295 | 99.2 | Plus |
| 3R | 32079331 | 3R | 16433076..16433181 | 2..107 | 500 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:10:22 has no hits.
MXO03370.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:29:01 Download gff for
MXO03370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17565-PA | 1..822 | 9..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:26 Download gff for
MXO03370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17565-RA | 78..907 | 1..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:57 Download gff for
MXO03370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17565-RA | 78..907 | 1..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:57 Download gff for
MXO03370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16433238..16433494 | 108..364 | 100 | -> | Plus |
| 3R | 16433075..16433181 | 1..107 | 97 | -> | Plus |
| 3R | 16433557..16434022 | 365..831 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:26 Download gff for
MXO03370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12258797..12258903 | 1..107 | 97 | -> | Plus |
| arm_3R | 12258960..12259216 | 108..364 | 100 | -> | Plus |
| arm_3R | 12259279..12259744 | 365..831 | 99 | | Plus |
