MXO03371.5prime Sequence
732 bp (702 high quality bases) assembled on 2007-06-15
> MXO03371.5prime
CAGTCGACATGGCCAAGGCGAGTAAGAAGGTGGCAGAAAGTAAGCGCAGG
AACGGAGTCGCCAACGAGAGCGAAAACGAGGAGATTGACCAGCAAAAGTC
CAATGGGACAGGTCGATCGTCCAGGAAGACGCCGAACAAACGAAAGGCCA
AACTGACTGTGGCCTCTGACAGCGAAGACAGCGATTGCCAGACCTCTACC
TCCAACGTGGATGTACCAGCTGCAAGGAACAAGCGCAAGGTGGGCAAGGC
CAGGAACGCCACCACTTCGCCCCGCAAAAATGGCAAAAAAATCGTTATAG
AGGATTCGGATGATGATGCTAATCATTCCGATGTAGACCCTAGTGCCGAC
AGTTCGCCAAGGAAGCCAAATATCAAACGCCAGACACGGCGATCCGTGCG
CGGTGAAACGGAAGATAGCAATGAACTGCCCTCCACCTCCAAAGCCTCTG
CACATGCATCAAGTCCGATCAAGAAGCGCAAGCTGAGCAGGGCTTCGACT
TCTTCCGTCAAAAATGGCAAGAAGGTTGCTGAAAAGGATTCGGAATCCGA
TGTCGATGCTGGAACAGAGGATGAGAAATCAGCTCAACCCCAGAAGGTTG
CAGCTAAATCGAAGTCCTCGCCAAACGCTAAGAAGGCTAAGGGACGTGGT
CGACGGAACGCCGGCACCAAGAAAGCCGACGATTCAATCGACCCAGAAAA
GCAATGGGAAGTCGAAAAAATTCTTGATCACG
MXO03371.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8289-PA | 1011 | CG8289-RA | 1..724 | 9..732 | 3620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8289-RA | 1770 | CG8289-RA | 119..842 | 9..732 | 3620 | 100 | Plus |
| CG8289-RB | 1767 | CG8289-RB | 119..839 | 9..732 | 3565 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17635342..17635926 | 593..9 | 2925 | 100 | Minus |
| X | 23542271 | X | 17634839..17634980 | 732..591 | 710 | 100 | Minus |
| 2L | 23513712 | 2L | 9789791..9789906 | 593..478 | 295 | 83.6 | Minus |
| 2L | 23513712 | 2L | 9789914..9790013 | 349..249 | 275 | 87.1 | Minus |
| 2L | 23513712 | 2L | 9788850..9788939 | 630..719 | 255 | 85.6 | Plus |
| 2L | 23513712 | 2L | 9789143..9789206 | 275..338 | 185 | 85.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:58:08 has no hits.
MXO03371.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:29:09 Download gff for
MXO03371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8289-PA | 1..724 | 9..732 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:34 Download gff for
MXO03371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8289-RA | 111..842 | 2..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:31 Download gff for
MXO03371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8289-RA | 111..842 | 2..732 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:31 Download gff for
MXO03371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17634839..17634977 | 594..732 | 100 | <- | Minus |
| X | 17635342..17635934 | 2..593 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:34 Download gff for
MXO03371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17528872..17529010 | 594..732 | 100 | <- | Minus |
| arm_X | 17529375..17529967 | 2..593 | 99 | | Minus |
