MXO03372.5prime Sequence
642 bp (610 high quality bases) assembled on 2007-06-15
> MXO03372.5prime
CAGTCGACATGTCGAAGGACGCGGACGTGGAGCAGGCGACCAAGCCGGAG
AGCGGAGTTGTCCAGGTGGAGCCAGCGATTCCGGAGCAGCCACAGGCCGC
CGTTCCGACCACCATCTCCACGGCGACCACAGTGATCGCGGTGACTAATG
GGGAAAAGCCAGCGGCAGCGACACCAGCAACAACTGCAACACCTGCGACA
GCAGAACAAGTGCAACCTGCAACAACCATCGCTGGCATTGAGTTGGCCAC
TCCAACGGCGGCGGCAACTTCACCACCAACAGGCAGCGGCAAGGCCAACA
TGGATCCAGCGCTGATCAACTTTAAGGTGCTCTATGTGCTCACCCAGCTG
TGCGGCCTGACCATGATCGTCCTGGTGGCCACCTGGATTGGCCTGCACTT
CGGCGGTCTGGCCGGCACCTCAAATCCCGGCGTGGAGTTCAACTGGCATC
CGCTGTTCATGACCATTGGCTTCATTTACCTGTATGGCAACTCCATTCTG
ATCTATCGTGGTTTCCGCACCACGCGCAAGAAGACTCTGAAGCTTACCCA
CGCCGGCATCCACATGGGTGCATTCATTCTGACGGTGATTGCCCTGAAGA
CGGTCTTCGATTCCCACAACTTGGCCAATCCGCCCATTCCCA
MXO03372.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:29:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1275-PB | 1023 | CG1275-RB | 1..634 | 9..642 | 3145 | 99.8 | Plus |
| CG1275-PA | 1023 | CG1275-RA | 1..634 | 9..642 | 3145 | 99.8 | Plus |
| CG1275-PC | 765 | CG1275-RC | 16..376 | 282..642 | 1780 | 99.7 | Plus |
| CG1275-PD | 732 | CG1275-RD | 1..343 | 300..642 | 1690 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1275-RA | 1574 | CG1275-RA | 198..832 | 8..642 | 3160 | 99.8 | Plus |
| CG1275-RB | 1698 | CG1275-RB | 322..956 | 8..642 | 3160 | 99.8 | Plus |
| CG1275-RC | 1300 | CG1275-RC | 207..567 | 282..642 | 1790 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2255538..2255813 | 283..8 | 1380 | 100 | Minus |
| 3L | 28110227 | 3L | 2253777..2253989 | 492..280 | 1050 | 99.5 | Minus |
| 3L | 28110227 | 3L | 2253543..2253692 | 642..493 | 750 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-C | 11124 | TART-C TARTC 11124bp | 9338..9467 | 107..231 | 126 | 61.2 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7902..8023 | 115..231 | 122 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2949..2989 | 160..200 | 115 | 75.6 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 516..573 | 160..216 | 107 | 67.2 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 529..571 | 161..203 | 107 | 72.1 | Plus |
MXO03372.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:29:17 Download gff for
MXO03372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1275-PA | 1..633 | 9..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:29 Download gff for
MXO03372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1275-RB | 317..955 | 1..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:01 Download gff for
MXO03372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1275-RB | 317..955 | 1..641 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:01 Download gff for
MXO03372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2253544..2253692 | 493..641 | 100 | <- | Minus |
| 3L | 2253777..2253986 | 283..492 | 99 | <- | Minus |
| 3L | 2255539..2255818 | 1..282 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:29 Download gff for
MXO03372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2253777..2253986 | 283..492 | 99 | <- | Minus |
| arm_3L | 2255539..2255818 | 1..282 | 98 | | Minus |
| arm_3L | 2253544..2253692 | 493..641 | 100 | <- | Minus |
