MXO03374.5prime Sequence
601 bp (585 high quality bases) assembled on 2007-06-15
> MXO03374.5prime
CAGTCGACATGACGGTGGATCTATCGCCAGTGCAGGAATACTATAAGGAT
AAGACGATATTCATCACTGGAGCGTCTGGGTTCATGGGCAAGGTTCTGCT
GGAGAAGTTGCTCTACTCCTGCCACTCCCTCAAGGAGGTGATCATCATCT
GCCGCCCGAAGCGCGGCAAGGCACCCGAGACGCGTCTCGAGGAGATGTTC
AAGCTGCCCATCTTCCAGCGCATCAAGGACGAGCGCCCGGAGATGCTCAA
GAGGGTTACCATCTACCAGGGCGACGTCACCTTCGACCAGCTCGGGCTCA
GCGGGGAGAGCTTGAAGCACGTGACCGAGAACACTAACATTGTTTTCCAC
ATGGCGGCCACCCTTAAGCTGGAGGGCAACCTTCGGGACGCCATCGATAT
GAACTTGCTAGGCACCCGGCGAGCGCTCAACGTGGCCAAGGAAATGAAGC
AGCTGGAGGCCTTCATCCACTTGTCCACGGCTTTTTGCAACTGCGACCAG
GATGTGATGTATGAGAAGGTGTACGAGTTTCCACACAAGCCGGAGGATCT
TATGCGCCTGGCCGAGTGGATGGACGTGAAGACCCTGNACGCCATTACGC
C
MXO03374.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-PC | 1521 | CG30427-RC | 1..593 | 9..601 | 2946 | 99.8 | Plus |
| CG30427-PB | 1500 | CG30427-RB | 1..593 | 9..601 | 2946 | 99.8 | Plus |
| CG30427-PA | 1500 | CG30427-RA | 1..593 | 9..601 | 2946 | 99.8 | Plus |
| CG30427-PD | 1500 | CG30427-RD | 1..593 | 9..601 | 2946 | 99.8 | Plus |
| CG17562-PA | 1500 | CG17562-RA | 413..444 | 433..464 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30427-RF | 1739 | CG30427-RF | 112..704 | 9..601 | 2954 | 99.8 | Plus |
| CG30427-RE | 2870 | CG30427-RE | 179..771 | 9..601 | 2954 | 99.8 | Plus |
| CG30427-RG | 1785 | CG30427-RG | 112..704 | 9..601 | 2954 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24934171..24934483 | 601..289 | 1554 | 99.7 | Minus |
| 2R | 25286936 | 2R | 24934552..24934831 | 288..9 | 1400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:04:36 has no hits.
MXO03374.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:29:24 Download gff for
MXO03374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-PD | 1..593 | 9..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:48 Download gff for
MXO03374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RG | 105..704 | 2..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:08 Download gff for
MXO03374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30427-RG | 105..704 | 2..601 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:08 Download gff for
MXO03374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24934171..24934483 | 289..601 | 99 | <- | Minus |
| 2R | 24934552..24934838 | 1..288 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:48 Download gff for
MXO03374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20821694..20822006 | 289..601 | 99 | <- | Minus |
| arm_2R | 20822075..20822361 | 1..288 | 98 | | Minus |
