MXO03379.5prime Sequence
622 bp (596 high quality bases) assembled on 2007-06-15
> MXO03379.5prime
CAGTCGACATGTTGACCGAAACGGCCACGGCCAGCGAGAACATCATGGAC
GAACTAGCCTCTCTGATACGCACCGAGATCCCCGAGGGCCGCCAGAGTCT
GCGGGACAGCTACACGAACCTGGAGCGGGTGGCCGACTACTGCGAGGACA
CCTACTACCGCGCGGACAACAAGAAGGCGGCCCTGGAGGCCACCAAGAAC
TACACCACCCAGTCGCTGGCCAGCGTGGCCTACCAGATTAACACGCTCGC
CTATAGCTACATGCAGCTCCTCGAGCTTCAGGCCCAGCAGCTCGGCGAGA
TGGAGTCCCAGATGAACCACATCGCCCAGACGGTGCATATCCACAAGGAG
AAGGTGGCCAGGAGAGAGATTGGCGTGCTTACGGCTAACATGGTGAGCTC
GCGCCAGTTTAAGATCGTGGCGCCCATCAATCCGGAGAAGCCCATCAAGT
ATGTGCGCAAGCCCATCGACTACTCGATGTTGGACGAGATTGGCCACGGC
ATTAACTCGGCCCAGCACTCGCAGGTGCGACAGAAACATCGGGGCTCCAG
CCATGGGTCCGTGCAATCCTTATTGCCGCCGTCGGTGGGACCTCCGCCAA
CCACGAAGCCCCCCACTTCCCC
MXO03379.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:29:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9749-PA | 1422 | Abi-RA | 1..605 | 9..613 | 2900 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abi-RF | 2294 | CG9749-RF | 69..678 | 8..617 | 2960 | 99 | Plus |
| Abi-RE | 2376 | CG9749-RE | 154..763 | 8..617 | 2960 | 99 | Plus |
| Abi-RB | 2373 | CG9749-RB | 148..757 | 8..617 | 2960 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14121746..14122102 | 364..8 | 1725 | 98.9 | Minus |
| 3R | 32079331 | 3R | 14121217..14121471 | 617..363 | 1245 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:14 has no hits.
MXO03379.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:29:43 Download gff for
MXO03379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9749-PA | 1..613 | 9..622 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:33 Download gff for
MXO03379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RB | 142..761 | 1..622 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:56 Download gff for
MXO03379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abi-RB | 142..761 | 1..622 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:56 Download gff for
MXO03379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14121212..14121469 | 365..622 | 98 | <- | Minus |
| 3R | 14121746..14122106 | 1..364 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:33 Download gff for
MXO03379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9947468..9947828 | 1..364 | 97 | | Minus |
| arm_3R | 9946934..9947191 | 365..622 | 98 | <- | Minus |
