MXO03381.5prime Sequence
631 bp (606 high quality bases) assembled on 2007-06-15
> MXO03381.5prime
CAGTCGACATGACGACCAGCATTGCACAAGGCACTCTCTTGGACGTGCTG
AAGAAGAAGATGCGCCAGACCAAAGAGGAGATGGAGAAGTATAAAGACGA
GTGCGAGGAGTTCCACAAGCGGCTGCAGTTGGAGGTGGTGCGCCGCGAAG
AAGCCGAATCCGAGGTTGCCGCTCTGAACCGTCGCATCCAGTTGCTCGAA
GAAGACTTGGAGCGCTCTGAGGAGCGTCTGGGCTCCGCCACAGCCAAGCT
GTCGGAAGCCTCTCAGGCCGCCGATGAGAGCGAACGGATACGAAAAGCGC
TTGAGAATCGCACAAATATGGAAGATGACAAAGTAGCTCTCTTGGAGAAC
CAGTTAGCGCAAGCAAAATTAATTGCAGAAGAAGCTGATAAGAAATACGA
AGAGGTGGCCAGAAAACTCGTGCTCATGGAACAGGATCTGGAGCGTTCCG
AGGAGAAGGTCGAGCTCAGCGAAAGCAAAATTGTGGAGCTTGAGGAGGAG
CTGCGCGTGGTTGGCAACAACCTGAAGTCCCTGGAAGTCTCTGAGGAGAA
GGCCACACAAAAAGAGGAGACCTTTGAGACGCAAATCAAAGTATTGGATC
ATTCTCTGAAAGAGGCTGAAGGTCGTGCTGA
MXO03381.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:29:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4898-PA | 759 | Tm1-RA | 1..623 | 9..631 | 3040 | 99.5 | Plus |
| CG4898-PL | 855 | Tm1-RL | 241..719 | 153..631 | 2345 | 99.5 | Plus |
| CG4898-PB | 1020 | Tm1-RB | 259..536 | 9..286 | 1365 | 99.6 | Plus |
| CG4898-PK | 1557 | Tm1-RK | 241..374 | 153..286 | 670 | 100 | Plus |
| CG4898-PJ | 858 | Tm1-RJ | 241..374 | 153..286 | 670 | 100 | Plus |
| CG4898-PD | 858 | Tm1-RD | 241..374 | 153..286 | 670 | 100 | Plus |
| CG4898-PE | 2136 | Tm1-RE | 1519..1652 | 153..286 | 670 | 100 | Plus |
| CG4898-PF | 1506 | Tm1-RF | 241..374 | 153..286 | 670 | 100 | Plus |
| CG4898-PG | 858 | Tm1-RG | 241..374 | 153..286 | 670 | 100 | Plus |
| CG4898-PI | 1326 | Tm1-RI | 844..977 | 153..286 | 670 | 100 | Plus |
| CG4898-PC | 1326 | Tm1-RC | 844..977 | 153..286 | 670 | 100 | Plus |
| CG4898-PH | 2037 | Tm1-RH | 1555..1688 | 153..286 | 670 | 100 | Plus |
| CG4898-PB | 1020 | Tm1-RB | 726..805 | 476..555 | 400 | 100 | Plus |
| CG4898-PK | 1557 | Tm1-RK | 564..643 | 476..555 | 400 | 100 | Plus |
| CG4898-PJ | 858 | Tm1-RJ | 564..643 | 476..555 | 400 | 100 | Plus |
| CG4898-PD | 858 | Tm1-RD | 564..643 | 476..555 | 400 | 100 | Plus |
| CG4898-PE | 2136 | Tm1-RE | 1842..1921 | 476..555 | 400 | 100 | Plus |
| CG4898-PF | 1506 | Tm1-RF | 564..643 | 476..555 | 400 | 100 | Plus |
| CG4898-PG | 858 | Tm1-RG | 564..643 | 476..555 | 400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RA | 2003 | CG4898-RA | 439..1061 | 9..631 | 3070 | 99.5 | Plus |
| Tm1-RQ | 1318 | CG4898-RQ | 437..983 | 9..555 | 2720 | 99.8 | Plus |
| Tm1-RL | 2194 | CG4898-RL | 331..809 | 153..631 | 2365 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15291382..15291526 | 9..153 | 710 | 99.3 | Plus |
| 3R | 32079331 | 3R | 15295113..15295247 | 153..287 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 15295426..15295546 | 286..406 | 605 | 100 | Plus |
| 3R | 32079331 | 3R | 15300745..15300823 | 474..552 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 15300104..15300180 | 399..475 | 370 | 98.7 | Plus |
| 3R | 32079331 | 3R | 15301622..15301687 | 550..615 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:56 has no hits.
MXO03381.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:29:51 Download gff for
MXO03381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4898-PA | 1..622 | 9..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:41 Download gff for
MXO03381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 439..1060 | 9..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:20 Download gff for
MXO03381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 439..1060 | 9..630 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:20 Download gff for
MXO03381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15300747..15300822 | 476..551 | 100 | -> | Plus |
| 3R | 15301624..15301687 | 552..615 | 100 | | Plus |
| 3R | 15291382..15291525 | 9..152 | 99 | -> | Plus |
| 3R | 15295113..15295246 | 153..286 | 100 | -> | Plus |
| 3R | 15295427..15295544 | 287..404 | 100 | -> | Plus |
| 3R | 15300110..15300180 | 405..475 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:41 Download gff for
MXO03381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11120835..11120968 | 153..286 | 100 | -> | Plus |
| arm_3R | 11121149..11121266 | 287..404 | 100 | -> | Plus |
| arm_3R | 11125832..11125902 | 405..475 | 100 | -> | Plus |
| arm_3R | 11126469..11126544 | 476..551 | 100 | -> | Plus |
| arm_3R | 11127346..11127409 | 552..615 | 100 | | Plus |
| arm_3R | 11117104..11117247 | 9..152 | 99 | -> | Plus |
