MXO03385.5prime Sequence
614 bp (613 high quality bases) assembled on 2007-06-15
> MXO03385.5prime
CAGTCGACATGGAGATGGTTGAACCGGATGCGCACTTGGTGGCACTCAAA
GTTATGCGTTTGATGCGGCCCACTTTGGTGGGCCTTGGACCTGTGGTAAC
CTGCGAGCCCACGGATTTGGTCCAGAGATTTAGCAGCTCCCAGGAGAGCG
ACGGAATGTCCGGTGCCTGTGCGGAGACCTTGGCGGCCGGCCAGGTGCTA
CTGCTGCCGCAGTCCTTCGGCAGCATTTACCTGGGCGAAACATTCGCCAG
CTACATCTGCGTCCACAATACCACCCCGAATCCGGTGGAATGCGTCACCG
TCAAGGCGGATCTACAGTCGAACACGTCACGCATCAACCTATCCATGCAC
GAGAACGCCAAGTCGCCGGTGGTATTGCCGCCGGGTGGAACTTTTGACGA
CGCGATACGATACGAGGTGAAGGAAATCGGAACACACATTCTCGTCTGCG
AAGTGAACTACTCGACTCCTGCGGGCTATGCTCAATCGCTGAGAAAGTTT
TTCAAGTTCCAAGTGCTGAAGCCACTCGATGTGAAAACCAAGTTCTACAA
TGCGGAAATCGACGAAATCTACTTGGAGGCACAAATCCAAAACGTGACCA
CCAGTCCCTTCTGC
MXO03385.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4953-PA | 1317 | CG4953-RA | 1..606 | 9..614 | 2930 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4953-RA | 1746 | CG4953-RA | 106..713 | 7..614 | 2980 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10266911..10267300 | 50..439 | 1890 | 99 | Plus |
| 2L | 23513712 | 2L | 10267424..10267598 | 440..614 | 875 | 100 | Plus |
| 2L | 23513712 | 2L | 10266808..10266852 | 7..51 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:34:00 has no hits.
MXO03385.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:30:12 Download gff for
MXO03385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4953-PA | 1..606 | 9..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:04 Download gff for
MXO03385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4953-RA | 102..713 | 1..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:55 Download gff for
MXO03385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4953-RA | 102..713 | 1..614 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:55 Download gff for
MXO03385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10266913..10267300 | 52..439 | 98 | -> | Plus |
| 2L | 10266804..10266852 | 1..51 | 92 | -> | Plus |
| 2L | 10267424..10267598 | 440..614 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:04 Download gff for
MXO03385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10266804..10266852 | 1..51 | 92 | -> | Plus |
| arm_2L | 10266913..10267300 | 52..439 | 98 | -> | Plus |
| arm_2L | 10267424..10267598 | 440..614 | 100 | | Plus |
