MXO03386.5prime Sequence
663 bp (617 high quality bases) assembled on 2007-06-15
> MXO03386.5prime
CAGTCGACATGGCAAACAGCTCCAGCTCCGACGAAAGCTGCAAGGCCCCC
GACAACTTTCGCATCTCGAGCGCCTCCACAAACGGCGAGGACGAGGAATC
AGATGTCGCAGGATACACAACAAAGCGCAGGCCAACGGCAGCGACGAAGG
AACTGTTGAAGGATGCGAACGCCAAGGATAGGAACGCCACCACGGGAATG
GGTGCCCACATGCGGTGCCCACTGTGCCACAGCTGCAGCGCCAGCCGATT
CCACTGTCGCAATTGCGTCAGAAACGGAAACATTACTCACAGCCAGGCGG
AAAGGCCCGAAAGCCTGACGGAGAAGCAGCAGCGCTACATCAACCTGCAG
GCGGGCCTCAAAACCTTCAGCACGCGCTACGAACGCCTTATCGGGCATCA
CCGCTCCAATGAAGATCGCCTGATGGCCATCAAGGCCAAGCGAAAGCAAC
TGGAGCTCCTACAGCAACTAATCTCCGGCACGGGACAGAGACTGCGCGTC
CTCGGCGAGCGACGCGATGAATTGCGTCGCGCCAATGCCGAGAAGCGGAA
GAACCTACCTAAATACCCGGACAAGGTCAAGATGCTCGAAAACTACGTGT
TGGATCGAGTGGAGAAAATAGAGAAACTCAGGAAGACCCATCTGGGTCTT
CTGGACAGCATAA
MXO03386.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:30:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11877-PA | 1512 | CG11877-RA | 1..655 | 9..663 | 3225 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg14-RA | 1866 | CG11877-RA | 78..732 | 9..663 | 3245 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29116843..29117194 | 312..663 | 1730 | 99.4 | Plus |
| 3R | 32079331 | 3R | 29116468..29116772 | 9..313 | 1525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:34:09 has no hits.
MXO03386.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:30:19 Download gff for
MXO03386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11877-PA | 1..653 | 9..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:11 Download gff for
MXO03386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg14-RA | 73..732 | 1..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:01 Download gff for
MXO03386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg14-RA | 73..732 | 1..663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:01 Download gff for
MXO03386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29116463..29116772 | 1..313 | 98 | -> | Plus |
| 3R | 29116845..29117194 | 314..663 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:11 Download gff for
MXO03386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24942185..24942494 | 1..313 | 98 | -> | Plus |
| arm_3R | 24942567..24942916 | 314..663 | 99 | | Plus |
