MXO03387.5prime Sequence
602 bp (569 high quality bases) assembled on 2007-06-15
> MXO03387.5prime
CAGTCGACATGACGACCTACTTCAACTACCCCAGCAAGGAGCTGCAGGAT
GAGCTGCGCGAAATCGCCCAGAAAATCGTTGCCCCCGGCAAGGGAATCCT
CGCCGCCGATGAGTCCGGCCCAACCATGGGCAAGCGTCTGCAGGACATCG
GCGTGGAGAACACCGAGGACAACCGCCGTGCCTACCGTCAGCTGTTGTTC
AGCACTGACCCCAAGCTGGCCGAGAACATCTCTGGAGTGATCCTGTTCCA
CGAGACCCTCTACCAGAAGGCCGATGATGGCACCCCCTTCGCCGAGATCC
TGAAGAAGAAGGGAATCATTCTGGGCATCAAGGTCGACAAGGGTGTTGTC
CCACTGTTCGGCTCTGAGGATGAGGTCACCACCCAGGGTCTGGATGACCT
GGCCGCCCGTTGCGCCCAGTACAAGAAGGACGGTTGCGACTTCGCCAAGT
GGCGTTGCGTCCTGAAGATCGGCAAGAACACCCCATCCTACCAGTCGATC
CTGGAGAACGCCAATGTCCTGGCCCGCTACGCCTCCATCTGCCAGTCGCA
GCGCATCGTCCCAATTGTGGAGCCCGAAGGTCCTGCCCGATGGCGATCAC
GA
MXO03387.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6058-PB | 1086 | Ald-RB | 1..569 | 9..577 | 2845 | 100 | Plus |
| CG6058-PC | 1086 | Ald-RC | 1..569 | 9..577 | 2845 | 100 | Plus |
| CG6058-PA | 1191 | Ald-RA | 100..668 | 9..577 | 2845 | 100 | Plus |
| CG6058-PF | 1185 | Ald-RF | 100..668 | 9..577 | 2845 | 100 | Plus |
| CG6058-PG | 1191 | Ald-RG | 100..668 | 9..577 | 2845 | 100 | Plus |
| CG6058-PD | 1086 | Ald-RD | 1..569 | 9..577 | 2845 | 100 | Plus |
| CG6058-PE | 1092 | Ald-RE | 1..569 | 9..577 | 2845 | 100 | Plus |
| CG6058-PH | 1092 | Ald-RH | 1..569 | 9..577 | 2845 | 100 | Plus |
| CG5432-PA | 1095 | CG5432-RA | 343..389 | 351..397 | 160 | 93.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ald-RM | 2102 | CG6058-RM | 278..870 | 9..602 | 2930 | 99.7 | Plus |
| Ald-RJ | 1614 | CG6058-RJ | 277..869 | 9..602 | 2930 | 99.7 | Plus |
| Ald-RL | 1615 | CG6058-RL | 278..870 | 9..602 | 2930 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26257428..26258020 | 602..9 | 2905 | 99.7 | Minus |
| 3R | 32079331 | 3R | 26414213..26414676 | 90..553 | 445 | 73.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:39:12 has no hits.
MXO03387.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:30:27 Download gff for
MXO03387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6058-PB | 1..592 | 9..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:46 Download gff for
MXO03387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RL | 278..869 | 9..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:28 Download gff for
MXO03387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RL | 278..869 | 9..601 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:28 Download gff for
MXO03387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26257429..26258020 | 9..601 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:46 Download gff for
MXO03387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22083151..22083742 | 9..601 | 99 | | Minus |
