Clone MXO03388 Report

Search the DGRC for MXO03388

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:33
Well:88
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG13089-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03388.5prime Sequence

270 bp (238 high quality bases) assembled on 2007-06-15

> MXO03388.5prime
CAGTCGACATGGATTCGAAGTTCTTTAAACTGCTCCTGCTGGGCGGCGCC
GTGCGCTTCTACTTCTGTCGCACGCCGCTGGCTCCGATGATTGGCAACCG
AGTGGAGTTCGCGACACCTTTAAATTCACACAAGCGCATGCAAGAGGGGA
TATTTCTTCTACAGAGTGGCATTGATCCCTATCTGGGCGACCTGGTACAC
GAATCGCCGCTGATACTCAGCGCGCTCTCCGGATTGTTTCAAAATACCCG
CAGTTTCTGCCGATATTCTA

MXO03388.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13089-PA 1281 CG13089-RA 1..236 9..244 1180 100 Plus
CG13089-PA 1281 CG13089-RA 234..263 241..270 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-U-RA 1478 CG13089-RA 58..320 9..270 1290 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8515153..8515282 9..138 650 100 Plus
2L 23513712 2L 8515343..8515475 139..270 615 99.2 Plus
Blast to na_te.dros performed 2014-11-28 19:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 3472..3534 269..206 119 67.2 Minus

MXO03388.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:30:34 Download gff for MXO03388.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13089-PA 1..262 9..269 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:38 Download gff for MXO03388.5prime
Subject Subject Range Query Range Percent Splice Strand
PIG-U-RA 58..319 9..269 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:35 Download gff for MXO03388.5prime
Subject Subject Range Query Range Percent Splice Strand
PIG-U-RA 58..319 9..269 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:35 Download gff for MXO03388.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8515153..8515282 9..138 100 -> Plus
2L 8515343..8515474 139..269 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:38 Download gff for MXO03388.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8515153..8515282 9..138 100 -> Plus
arm_2L 8515343..8515474 139..269 99   Plus