MXO03389.5prime Sequence
589 bp (581 high quality bases) assembled on 2007-06-15
> MXO03389.5prime
CAGTCGACATGAAGGTCTTCATCTGCCTGTTGGCCACCATCTGCGCCTGC
AATGCCACCTTCCTGTCCCTTCTGGGCGGCGGCGGCGGTGGTGGAGGAGG
AGGAGGTAGCAAGACCACTTACAATGTGATAGCCACGCCCAGTTCGGGAG
GCGGCGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGAGGTCACGGATAT
TCATATGCCCAGGGAGGCGGCGGAGGTCATGGGTATGCGCAGGGACATGG
CTACGGACATGGACACGGTGGCTCACCGCAGATCATCAAGGTCATTCTGC
AGGAGGGTCAGGGCTACAGCAACGCTGGAGGATCAGCCGGCGGCATTGTG
TCCTCGGAAGGTCATGGCTACAGTCACGGTCATGGTCATGTTTACCCCCC
CGGTCACGGATCCTATGGCGGTCAGCAGGCCCAGATATACAAGATCATCG
AACAGGCCCCGGCTCCAGTCCCAGCTCCTGCCCCCGTTCCCATTCCGATT
TCGATTCCTGCCCCTGCTCCGCCAGCTGCTCCCATTGCCTATCATGCTGC
CAGTGGCTCCAATGGCTACTCCTATGATCAGGGCCCATT
MXO03389.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2961-PA | 1050 | Ipod-RA | 1..382 | 9..390 | 1910 | 100 | Plus |
| CG2961-PA | 1050 | Ipod-RA | 394..577 | 402..585 | 920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ipod-RC | 1871 | CG2961-RC | 643..1219 | 9..585 | 2795 | 99 | Plus |
| Ipod-RB | 1593 | CG2961-RB | 365..941 | 9..585 | 2795 | 99 | Plus |
| Ipod-RA | 1328 | CG2961-RA | 100..676 | 9..585 | 2795 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10231654..10232226 | 585..13 | 2775 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:39:21 has no hits.
MXO03389.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:30:41 Download gff for
MXO03389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2961-PA | 1..580 | 9..589 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:51 Download gff for
MXO03389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipod-RA | 93..679 | 1..589 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:31 Download gff for
MXO03389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipod-RA | 93..679 | 1..589 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:31 Download gff for
MXO03389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10231651..10232230 | 8..589 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:51 Download gff for
MXO03389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10125684..10126263 | 8..589 | 98 | | Minus |
