MXO03390.5prime Sequence
555 bp (555 high quality bases) assembled on 2007-06-15
> MXO03390.5prime
CAGTCGACATGACTCCCAATATCGAACACCTGCAAGTGGCGCTCGAGGTG
GCCAAGAATACGCGGGAGGCGGTCCTCTGTCTGACCAAAGAATGGCTGAG
GAATCAAAACCACACCCTGCCCCAAGATCTTCACTCCTACTCTCTGCATT
CCCTGGCATTGAAGCATCCGCTCCAGTCGGAGGTCAAGGAAGTTAAGTTC
CAGAACCAGCTGGGTGACTTTGTGTACAGTGGCAAGGTGACAACGCTGCA
GGAGGAGATGCCGGCCATTATCGAGTCCCTGCTGGTCCTGGAGCATCTAT
ACGAGATCATTGTGTTCGATCACCAGTCCTGGAACTGCTACTTCAATAAC
TTCGTGCATTTCTTCCATCACAACATGCACGAGGCTCTCAAGGTCGCCGG
TCTCAACGATGCCTGCAATCCGAGGAACGCCGAGTACAATGCCGATCACA
TATGGCCGATGTTTGGCGCCGCCGTGGAGACCATCAAGGTGCTGACCATC
ATCGAGCACAAGTACGAGCAGCTGATCAAGCTGTATCAGGCAAGCTTTCT
AGACC
MXO03390.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:30:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6023-PA | 534 | CG6023-RA | 1..531 | 9..539 | 2655 | 100 | Plus |
| CG6023-PB | 999 | CG6023-RB | 466..996 | 9..539 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6023-RC | 1453 | CG6023-RC | 554..1084 | 9..539 | 2655 | 100 | Plus |
| CG6023-RA | 1425 | CG6023-RA | 526..1056 | 9..539 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18314493..18314937 | 539..95 | 2225 | 100 | Minus |
| X | 23542271 | X | 18315017..18315103 | 95..9 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:11:05 has no hits.
MXO03390.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:30:47 Download gff for
MXO03390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6023-PB | 466..999 | 9..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:05 Download gff for
MXO03390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6023-RA | 498..1031 | 9..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:01 Download gff for
MXO03390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6023-RA | 526..1059 | 9..543 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:01 Download gff for
MXO03390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18314490..18314936 | 96..543 | 99 | <- | Minus |
| X | 18315017..18315103 | 9..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:05 Download gff for
MXO03390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18209050..18209136 | 9..95 | 100 | | Minus |
| arm_X | 18208523..18208969 | 96..543 | 99 | <- | Minus |
