MXO03394.5prime Sequence
578 bp (577 high quality bases) assembled on 2007-06-15
> MXO03394.5prime
CAGTCGACATGGAGACACCCATGGCCGATGACCTGTTGCAGTTCCGCGAC
TACAGCGGCGGTGCCCCGGCCCAAATCAATGTCAATTCCCCTACGCACGG
CGGATCGGGTGGTTCTGGTGGTGGCTCTGCTGGTTCCGGCGGCTCCGTTG
GCGGTGGTGGTGCCAACGCACAGCGTCAACGCGGCGATCCGCTGGCGGAT
CTCATCTATGACATGACCTCCTCGGCCCAGGGATTCTCCGGAGCTGCATC
CTCGGGCGGCTCCCAGCCGCAGAACTCATCGCTGGACGGATCCGCCGGCG
GTGGAGGCGGTGGTGCGAAACTATCACTGTTTACGATCGAGTACTACCAG
CAGTTCTTCAACGTGGACACCTATATGGTGCTCGAGCGAATCGCCAACTC
CATGATACCCAAACGGGCCTCTGGCAACTATCTGCGCATGAACATCGGCG
AGAATCCGGATCTATATGGACCCTTCTGGATAACCGTCACCCTGATCTTT
TCCATAGCAATAAGTGGTAATATTGCCAGCTATTTGCAGCAAGCCACTGA
TGCGTACAAATGGCACTACAACTTCCAT
MXO03394.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4645-PA | 1083 | CG4645-RA | 1..570 | 9..578 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4645-RB | 1415 | CG4645-RB | 145..714 | 9..578 | 2850 | 100 | Plus |
| CG4645-RC | 1588 | CG4645-RC | 145..714 | 9..578 | 2850 | 100 | Plus |
| CG4645-RA | 1521 | CG4645-RA | 251..820 | 9..578 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12910203..12910688 | 9..494 | 2430 | 100 | Plus |
| X | 23542271 | X | 12910752..12910836 | 494..578 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:09:58 has no hits.
MXO03394.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:30:55 Download gff for
MXO03394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4645-PA | 1..570 | 9..578 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:41 Download gff for
MXO03394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4645-RA | 243..820 | 1..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:09 Download gff for
MXO03394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4645-RA | 243..820 | 1..578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:09 Download gff for
MXO03394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12910195..12910688 | 1..494 | 99 | -> | Plus |
| X | 12910753..12910836 | 495..578 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:41 Download gff for
MXO03394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12804228..12804721 | 1..494 | 99 | -> | Plus |
| arm_X | 12804786..12804869 | 495..578 | 100 | | Plus |
